Abig012135.2
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- bab1
- Assembly
- GCA_963921985.1
- Location
- OY998123.1:2534314-2538665[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-05 0.025 14.5 0.0 20 43 4 28 1 30 0.84 2 3 1.8e-17 1.7e-14 53.5 0.0 1 43 60 103 60 105 0.95 3 3 3.9 3.9e+03 -2.1 1.5 6 15 189 198 187 201 0.88
Sequence Information
- Coding Sequence
- ATGCGCTTCACACAAGCTTCCGCTCGTTACGGTATTCCCAAAGGTACACTCTACGACAACATTTTAGCAGACAGCTACCAATATCAATTGCAGTCCATGTGGCAAAAATGTTGGAACACGAATCAAAGTCTGGTGCATAATTTACGATTTAGAGAACGAGGTCCGTTGAAATCGTGGAGACCGGAAACGATGGCCGAAGCTATTTTTTCCGTTCTCAAGGAAGGACTTTCATTATCGCAGGCCGCCAGAAAGTATGACATACCCTATCCGACATTTGTTCTATACGCCAACAGAGTACACAACATGTTAGGACCATCTGCTGATGGTGGATCAGATTTGAGGCCCAAGGGTAGAGGAAGACCGCAACGTATTCTTCTCGGTGTTTGGCCCGATGAACACATTAAAGGGGTCATCAGGGCAGTTGTATTTCGTGATTCTCATCACATAAAAGAAGATCCAATTGGATATCCACGTATTCACgaCGGGGTGGGAATACCAGCCAGTTACCCTAACAATACATGCAACAATGGTTCAGACCCTACGGTGTCTCCTGGCGCTGCAGCTGCGGCAGCCGTCGCGGCGGTCGCCCAAGGTCTTCGACAACAAATGTGCAACATGATGGCAGCCGcacaacagcaacaacagcaacagcagcagcagcagcaacaacaacagcaatcacaacaacaacaacagcaacaaaattGCGTTCATGACAGTCTTGTCAACTCTCTGACGTTAGCGGCTCATTGCACGGCCTCTCCACTTCCCATGCCCACAACAGCACTTTCGAGCAACGGCGCAACACCTACATTGAGTCTAGGCGGACATCGGATGACTAGTCCGGCCAGTGTACAAGACTTGCGAATAAGTCCTACAGGATCAGTCATGGAAAGTCCTTTGTCGTCACCACTGGGACTTACTATATCAAACGCAATGGTGCCTCCTCCATCTCAGCAACAACAACCACAAACCCCAACGGCAATGGGTTTGACAGCAGGTGGTAATGACGTAACAGGTATTGGCGTTTCGGGGATGACATACAAACCGTCCACGAGACCATTCGCCTCGCCGCGTCCTGAGACCCTTTTCCAAGAAGACATCGACGAGCTAGTGAAACCGATGCACACTGCAACTACCACTTCTCCCCATCATCTTCATCACCATCATCCTCATCATCACTTACCCAAAGATTCGATGACGACGGCGACGTCCATTAAAATTGAACCGTTGACAGAGTGCCGGGGCGAATGA
- Protein Sequence
- MRFTQASARYGIPKGTLYDNILADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIKGVIRAVVFRDSHHIKEDPIGYPRIHDGVGIPASYPNNTCNNGSDPTVSPGAAAAAAVAAVAQGLRQQMCNMMAAAQQQQQQQQQQQQQQQQSQQQQQQQNCVHDSLVNSLTLAAHCTASPLPMPTTALSSNGATPTLSLGGHRMTSPASVQDLRISPTGSVMESPLSSPLGLTISNAMVPPPSQQQQPQTPTAMGLTAGGNDVTGIGVSGMTYKPSTRPFASPRPETLFQEDIDELVKPMHTATTTSPHHLHHHHPHHHLPKDSMTTATSIKIEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030905;
- 90% Identity
- iTF_00030905;
- 80% Identity
- -