Aher018136.1
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856324.1:12822080-12832144[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.059 8.7e+02 0.9 0.0 25 49 217 241 204 245 0.80 2 4 0.00017 2.5 9.0 0.3 25 48 245 268 241 271 0.86 3 4 0.0003 4.4 8.2 0.1 16 46 328 358 325 361 0.84 4 4 7.3e-06 0.11 13.4 0.5 22 48 362 388 358 391 0.93
Sequence Information
- Coding Sequence
- ATGAACGGAAACACTTCAAAACAGTGCAGAATATGTCTTGCCCATGGAGCAGAAATATTACTTTTCGGATCTGAAGAAAGTAAAGAAATAGTTTCCAAACTATCACAATGTGTTCATGAACAGGTAGACGACAAAGATGGGTATCCTCGCCACATCTGTACATCGTGCAATGACACACTCAACacaatttgtaattttgtaaaaacttTTAGAGAATCTAACAAATTGCTAGAGAAAGCATCTAAGACTATTGTTAAAGAAGAATTAGTAGACATAACTGATAATAACGATTATTTTTATGACTGTGGAATTGAAGTCAAATATAATACATTAAAGAAAATACCCAAAATAGAATTTGACAACACACAACAATTTTTAGAGTTACTCAAACCATTCCAGTCGAAGATAAAAAATAAACCAAATAAGAAGATTAAAAAGGAACCAAATAGTAAAATAAagaaagagaaaaataaaacaaatttagtTAAAAAGGGAGCAAAAGTTAAAAGCAATACTGAGAGAGCAGGTTCAATATTAGAAAGGAAAAATTCTGAAAATATTAACATAAAAGAAGAAGCTATAACTGTTGATattgaatttaataataatacaaaagaAACTGAGAAGAAAACGAAAGAACCCAGAAAAGTACTCTGTGATCTCTGTGGCGATGTTTTTAACTCGGGGGAGCAATTAAGGAAACATCAAATTAgcattcatttaaaaaaagcaGTACAATGTCCAGTGTGTCAAAAAACAATTTACGATTCTTACGATTTAAACAGGCATATTCGTCGGGTTCATAGTAATGAAgggaaagattttatttgttcTGCATGTGGAAAAGCATTCGCATACAAGTACGATCTGGCCAAGCACTACAGAACAACCCATGAGAGACATTTATTAAAGAAAAGGAAGTATCCTTGCAAACTTTGTGACAGGACATTTGCTTGTGCTAAGTCAGTCCTAATGCACGAGAGATCTACGCATACTGGTGAGCGTCCAGCCGTATGCACCATCTGCGACTCCCGCTTCTACCACGAAGACTACCTGAAAGAGCACATGCGTCTCCACACCGGAGAGACTCCGTTCAAATGTCCCATCTGTAACCAAGGGTACGCTCAGAGAGGCAATATGCGGAGCCATATACGTCACAGACATAGTTTATCTCAATtatag
- Protein Sequence
- MNGNTSKQCRICLAHGAEILLFGSEESKEIVSKLSQCVHEQVDDKDGYPRHICTSCNDTLNTICNFVKTFRESNKLLEKASKTIVKEELVDITDNNDYFYDCGIEVKYNTLKKIPKIEFDNTQQFLELLKPFQSKIKNKPNKKIKKEPNSKIKKEKNKTNLVKKGAKVKSNTERAGSILERKNSENINIKEEAITVDIEFNNNTKETEKKTKEPRKVLCDLCGDVFNSGEQLRKHQISIHLKKAVQCPVCQKTIYDSYDLNRHIRRVHSNEGKDFICSACGKAFAYKYDLAKHYRTTHERHLLKKRKYPCKLCDRTFACAKSVLMHERSTHTGERPAVCTICDSRFYHEDYLKEHMRLHTGETPFKCPICNQGYAQRGNMRSHIRHRHSLSQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028160;
- 90% Identity
- iTF_00028160;
- 80% Identity
- iTF_00028160;