Aher024326.2
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856333.1:4920754-4923240[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0096 0.66 11.2 1.5 3 23 12 32 10 33 0.94 2 21 0.00097 0.066 14.4 0.1 2 23 39 61 38 61 0.95 3 21 0.0025 0.17 13.1 1.4 1 23 66 89 66 89 0.93 4 21 2.7e-05 0.0018 19.3 3.2 1 23 93 116 93 116 0.97 5 21 0.0022 0.15 13.3 0.4 2 23 123 144 123 144 0.96 6 21 0.22 15 7.0 0.6 1 23 189 211 189 211 0.97 7 21 0.061 4.2 8.7 0.1 2 23 239 261 238 261 0.94 8 21 0.0018 0.12 13.5 0.4 2 23 282 304 281 304 0.96 9 21 0.00025 0.017 16.2 3.1 1 23 309 332 309 332 0.95 10 21 0.0036 0.25 12.6 1.1 1 23 336 359 336 359 0.94 11 21 0.026 1.8 9.9 3.2 2 23 362 384 361 384 0.95 12 21 7.7 5.3e+02 2.1 0.2 2 20 391 409 390 411 0.92 13 21 0.00084 0.058 14.6 2.5 1 23 458 481 458 481 0.94 14 21 0.82 56 5.2 0.1 2 23 509 531 508 531 0.94 15 21 0.0036 0.25 12.6 0.2 1 23 553 576 553 576 0.96 16 21 0.00015 0.01 16.9 0.3 3 23 583 603 582 604 0.94 17 21 0.0055 0.38 12.0 0.6 1 23 609 632 609 632 0.90 18 21 0.024 1.6 10.0 0.7 3 23 639 660 638 660 0.92 19 21 0.005 0.34 12.1 5.0 1 23 664 687 664 687 0.97 20 21 0.099 6.8 8.0 0.5 2 23 694 715 693 715 0.97 21 21 0.091 6.3 8.2 2.6 1 23 721 743 721 743 0.96
Sequence Information
- Coding Sequence
- ATGAACGAGCTACATTCCAATAATAAGATCATTTGTTCATTCTGCGGTATGACTTTCGGAAAAGATCCGAATTACAGATCACATTTGAAACGTCACCACAACCCTGGTTGCTCAAAATGTCCTGACTGTGATTTAGATTTTGATAATATATCTAAATTAATAAACCATCGAGCTAAAGCGCACGGTGAGAAGACATTCAAATGTCCGAAATGCTTTGAGACCTTTGGTACACAATATAAAAGGCAGAAGCATCTGATAGACGCCCATGGATCCGGACATCCCTGCAACTATTGTGGCAAGCTGTTTACCCGTAACTCCTTTATGAAGGATCACATAAGACGGTCGCATTTGAAAGAGAAGAACGCCGAATGTTCAGTTTGCAAGGAGAAGTTTTTCGATAACATATTGTTAAGAATACACATGGTAAAACATGTCGGGGAAAGGAACTTTCATTGCGATGTTTGCGATGACAATCCGGTAAAGGGTGTCAGTAAACTAAGGAGGATGAACCTGCAAATATTGTTCAACAACACATCGATGATACCATTCAAATGGAGAGGCAGATACATGTGTTTTTACTGCGGTGATGACCTACCAGACCATGACACTTTGCGGATACATACAAAGGGTCACGGTAACTGCTCCGATAGAGACCGAGCCGTCAGACTTGTAAAATCCGGCGATTCAGAAGTCAAAATCGACGTATCAGACATAACCTGTGAACTATGTAACGAAACATTCGGAACTTTCGACGAAATCGTCTCTCATTTGATAGTTAAGCATAAGTTACCGTATCACAAAGACGTGGATTTAATTCTTACTACGTACAGACTTGCTGATCTTAAATGTCTGCAATGCGAAGAGAGTTTCGATTATTTGAGCAAACTTATATCACACGTCAACACCAGTCATCCAAGCAACTGTTTTCTATGTGAAAGATGTAACCAAAAGTTTAATAAGAAAAGCGATTTACGCGCACATTTCAGGACAAAGCATAAGACCAAATACAACTGTTTAAAATGCTATTTGAGCTTCAATACTAACGCTTTACTTCAAAATCACAAATTGAACGATCACATTTCCATGTGCAATCTCTGTTTCCACACGTTTACATCTGCGAGTAAAAGATTAAAACATATGAAGGAAGAACATAATTTCGATGGGATATTACAATGCAGATTATGTCTTAAAATCTTGCAAACGAAACAAGCGTTCTTTAGACATGCAGCTAAATGTAACATTATGGGAGAAAGCAAACCTATAGTCATCGACGATGCAGAAAAGGAAGCTCCTGTTAAAGACTTGAGAAGCAATATTGCTTGCATCTTGAACATGTCTACCGCTATGCCTTTCAAACACTTCATGAATAGATTCAGATGTTTCTACTGCCCAAAAGATTTTACTGAATGTGACGATTTGAAACAGCACACTGTTATGGAGCACCCGCTATGTGACATCAAGCTGAAATCTATGAGATTAAGGAATAGAAAAGAAGAAGGAAtcaaagtggatacatcttctCTTTCCTGCAAACTCTGTTTTGAATCAATGACAAATTTGGACGTTTTAACTGACCACATAATATCGGAACATAAAGCGAAATATGACAAATCTATTCCGAGCGTCTTGCAGCCGTTTAAACTGATAAAAGAAAACTTTCCATGTCCATTCTGCGGTGTAGTCTACGGGTATTTTAGTACGTTATTGAAGCATGTCAGTAAAGACCATAGTGATAATAGAAAAATTTGCGTTTACTGCGGTGAAGCGTTTAGGAGCGATCCTAATTTAAGAGCGCATATAACTCGGCATCATAGGTCCGCGCGTTACAAATGTAACCTCTGTGATTCAGAGTTTATAAACAACAACGATTTGCAATTACATTCGGGTCGGAAACACGGTGTGAAAGTTGCCAATTGTCCCCAGTGCCCAGAGAAATTTATATCTCGATATAGAATGCATAGGCACTTGATAGATGCTCATGGGACTGGTCATAAATGTTCTTACTGTGGAATTCTTTTCACAAGACACTCTTTCATGATGAGCCACGTAAGAAGATTGCATTTaaaagagaaaaatgtggaaTGCTCAGTTTGCTTCGAAAGATTCTTTGATGGCCAACGATTAAAAATGCATATGATCAAACATATAGGAGAGAGGAATTTTCATTGCGATTTTTGTGGTAAGAAATTTCTTTGGAAGAAAAATCTTAGAGGACATATGGCTTCACACATTAAACACGCGAATATTCAAAATTAA
- Protein Sequence
- MNELHSNNKIICSFCGMTFGKDPNYRSHLKRHHNPGCSKCPDCDLDFDNISKLINHRAKAHGEKTFKCPKCFETFGTQYKRQKHLIDAHGSGHPCNYCGKLFTRNSFMKDHIRRSHLKEKNAECSVCKEKFFDNILLRIHMVKHVGERNFHCDVCDDNPVKGVSKLRRMNLQILFNNTSMIPFKWRGRYMCFYCGDDLPDHDTLRIHTKGHGNCSDRDRAVRLVKSGDSEVKIDVSDITCELCNETFGTFDEIVSHLIVKHKLPYHKDVDLILTTYRLADLKCLQCEESFDYLSKLISHVNTSHPSNCFLCERCNQKFNKKSDLRAHFRTKHKTKYNCLKCYLSFNTNALLQNHKLNDHISMCNLCFHTFTSASKRLKHMKEEHNFDGILQCRLCLKILQTKQAFFRHAAKCNIMGESKPIVIDDAEKEAPVKDLRSNIACILNMSTAMPFKHFMNRFRCFYCPKDFTECDDLKQHTVMEHPLCDIKLKSMRLRNRKEEGIKVDTSSLSCKLCFESMTNLDVLTDHIISEHKAKYDKSIPSVLQPFKLIKENFPCPFCGVVYGYFSTLLKHVSKDHSDNRKICVYCGEAFRSDPNLRAHITRHHRSARYKCNLCDSEFINNNDLQLHSGRKHGVKVANCPQCPEKFISRYRMHRHLIDAHGTGHKCSYCGILFTRHSFMMSHVRRLHLKEKNVECSVCFERFFDGQRLKMHMIKHIGERNFHCDFCGKKFLWKKNLRGHMASHIKHANIQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00027090;
- 90% Identity
- iTF_00027090;
- 80% Identity
- -