Aals022121.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004689.1:4664866-4667713[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.024 1.6 9.8 1.1 1 23 14 37 14 37 0.96 2 23 3.8 2.4e+02 2.9 0.1 9 23 118 133 111 133 0.90 3 23 0.01 0.67 11.0 1.5 3 23 140 160 138 161 0.94 4 23 0.0011 0.068 14.1 0.1 2 23 167 189 166 189 0.95 5 23 0.0027 0.18 12.8 1.4 1 23 194 217 194 217 0.93 6 23 2.9e-05 0.0019 19.0 3.2 1 23 221 244 221 244 0.97 7 23 0.0024 0.15 13.0 0.4 2 23 251 272 251 272 0.96 8 23 0.18 11 7.1 1.2 1 23 317 339 317 339 0.98 9 23 0.49 31 5.7 0.1 2 23 367 389 366 389 0.95 10 23 0.0019 0.12 13.3 0.4 2 23 410 432 409 432 0.96 11 23 0.00021 0.014 16.3 2.8 1 23 437 460 437 460 0.95 12 23 0.0015 0.095 13.7 0.7 1 23 464 487 464 487 0.94 13 23 0.0059 0.38 11.8 2.0 2 23 490 512 489 512 0.96 14 23 6.4 4.1e+02 2.2 0.1 2 20 519 537 518 539 0.91 15 23 0.00091 0.059 14.3 2.5 1 23 586 609 586 609 0.94 16 23 1.1 73 4.6 0.1 2 23 637 659 636 659 0.94 17 23 0.0064 0.42 11.7 0.1 1 23 681 704 681 704 0.96 18 23 7.4e-05 0.0048 17.8 0.5 3 23 711 731 710 732 0.94 19 23 0.006 0.39 11.7 0.6 1 23 737 760 737 760 0.90 20 23 0.026 1.7 9.8 0.7 3 23 767 788 766 788 0.92 21 23 0.028 1.8 9.7 5.7 1 23 792 815 792 815 0.97 22 23 0.11 7 7.8 0.5 2 23 822 843 821 843 0.97 23 23 0.099 6.4 7.9 2.6 1 23 849 871 849 871 0.96
Sequence Information
- Coding Sequence
- ATGACCACAGCCCTGCCTTTTAAATTCTTCATGCAAAGATTTCGATGTTTCTATTGCACGGAAGATTTTACCGACTTCGAACCATTAAAGCTTCACACGGTAACCCAACACACTTATTGTGACCCAAAAAGTAAGCTAATGAAGTCGTTCAAAGGAAATTATATTAATGTTAAATTGGACATACATTCCATGTCGTGTAAACTTTGCTGCGAAACCGCCGATAGCTTACAATCGATGATCGACCATTTGACTCGAAATCACCAAGCTAAATTCGATAAAAACTTCGTCAGTCTCCTCCAGCCTTTCAGGCTTATTAAAGACAACATGGCCTGTCTTATTTGCATCAATGTTTCTTTCAGATACTTCTCTAAACTGTTAGAACACATGAACGAGCTGCATTCCAATAATAAGATTATCTGTTCATTCTGCGGTATGACTTTCGGAAAAGATCCGAATTACAGATCACATTTGAAGCGGCACCACAATCCTGGTTGTTCAAAATGTCCCGACTGTGATTTAGATTTCGATAATATATCTAAATTAATAAACCATCGAGCTAAAGCACACGGTGAGAAGACATTCAAATGTCCGAAATGCTTTGAGACATTTGGTACACAATATAAAAGGCAGAAACATTTGATAGACGCCCATGGGTCCGGACATCCCTGCAACTATTGCGGCAAGCTGTTTACCCGTAACTCCTTTATGAAGGATCACATAAGACGGTCGCATTTGAAGGAGAAAAACGCTGAATGTTCAGTTTGCAAGGAGAAGTTTTTCGATAACATATTGTTAAGAATACACATGGTAAAACATGTCGGGGAGAGGAATTTTCATTGTGATGTATGCGATGACAATCCGGTAAAGGGTGTCAGTAAACTAAGGAGGATGAACCTGCAAATATTGTTCAACAACACATCGATGATACCATTCAAATGGAGAGGCAGATACATGTGTTTTTACTGTGGCGATGACCTACCGGACCATGACACTTTGCGGATGCACACAAAGAGTCACGGTACCTGCTCCGATAGAGATCGAGCAGTCAGACTCGTTAAATCCGGCGATTCAGAAGTCAAAATCGACGTATCAGACATAACCTGTGAACTTTGTCTCGAAACATTCGGAACTTTCGACGAAATCGTCTCTCATTTGATGGTTAAGCATAAATTACCGTATCACAGAGACGTTGAATTGATTCTAACCACGTATAGACTTGTAGATCTTAAATGTCTGCAATGCGAAGAGAGTTTCGATTATTTGAGCAAACTTATATCACATGTAAATACTAGTCATCCAAGCAACTGTTTTCTATGCGATAGATGTAACCAAAAGTTTAATAAGAAAAGCGATTTACGCGCACATTTCAGGACGCAGCACAAAACTAAATACAACTGTTTAAAATGCTCTTTAAGTTTCAACACCAACGCCCTACTTCAAAATCACAAATTGAACGCTCACATGTCCATGTgcaatatttgtttcaacacaTTTACGTCTGCGAGTAAAAGATTAAAACATATGAAGAAAGAACACAATTTTGATGGGGTCTTACAATGCGGACTATGTCTTAAAATCTTACAAACGAAACAAGCTTTCTTTAGACACGCAGCTAAATGTTACATTATGGGAGAAAGCAAACCTATAGTCATCGACGATGCAGAAAAGGATGCTCCTGTAAAAGACTTGAGAAGCAATATTGCTTGCATCTTGAACATGTCTACCGCTATGCCTTTCAAACACTTCATGAATAGATTCAGATGTTTCTACTGCCCAAAAGATTTTACTGAATGTGACGATTTGAAACAGCACACTGTAATGGAGCACCCACTATGTGACATCAAGCTGAAATCTATGAGATTAAGGAATAGAAAAGAAGAAGGAATCAAAGTGGATACATCTTCTCTTTCCTGCAAACTCTGTTTTGAATCAATGACAGATTTGGACGTTTTAACTGACCATATAATATCGGAACATAAAGCGAAATATGACAAATCTATTCCGAGCGTCTTGCAGCCGTTCAAACTGATCAAAGAAAACTTTCCTTGCCCATTCTGCGGTGTAGCCTATGGGTATTTTAGTACGTTATTGAAACATGTCAGTAAAGACCATAGTGATAATAGAAAAATTTGCGTTTACTGCGGTGAATCGTTTAGGAGCGATCCTAATTTAAGGGCGCATATAACTCGGCATCACAGGTCCGCGCGTTACAAATGTAACCTCTGTGATTCAGAGTTTATAAATAACAACGATTTGCAATTACATTCGGGTCGGAAACACGGTGTGAAAGTTGCCAATTGTCCCCAGTGTCCAGAGAAATTTATATCTCGATACAGAATGCATAGGCACTTGATAGACGCCCATGGGACAGGACACAAATGTTCTTACTGTGGAAATCTGTTCACAAGACACTCTTTCATGATGAGCCACGTAAGACGATTGCatttaaaagagaaaaacgTGGAATGCTCAGTTTGTTTTGAAAGATTCTTTGATGGCCAGCGTTTGAAAATGCATATGATCAAACATATAGGAGAGAGGAATTTTCACTGCGATTTTTGTGGCAAGAAATTTCTTTGGAAGAAAAATCTTAGAGGACATATGGCTTCGCATATTAAACACGCGAATATTCAAAACtaa
- Protein Sequence
- MTTALPFKFFMQRFRCFYCTEDFTDFEPLKLHTVTQHTYCDPKSKLMKSFKGNYINVKLDIHSMSCKLCCETADSLQSMIDHLTRNHQAKFDKNFVSLLQPFRLIKDNMACLICINVSFRYFSKLLEHMNELHSNNKIICSFCGMTFGKDPNYRSHLKRHHNPGCSKCPDCDLDFDNISKLINHRAKAHGEKTFKCPKCFETFGTQYKRQKHLIDAHGSGHPCNYCGKLFTRNSFMKDHIRRSHLKEKNAECSVCKEKFFDNILLRIHMVKHVGERNFHCDVCDDNPVKGVSKLRRMNLQILFNNTSMIPFKWRGRYMCFYCGDDLPDHDTLRMHTKSHGTCSDRDRAVRLVKSGDSEVKIDVSDITCELCLETFGTFDEIVSHLMVKHKLPYHRDVELILTTYRLVDLKCLQCEESFDYLSKLISHVNTSHPSNCFLCDRCNQKFNKKSDLRAHFRTQHKTKYNCLKCSLSFNTNALLQNHKLNAHMSMCNICFNTFTSASKRLKHMKKEHNFDGVLQCGLCLKILQTKQAFFRHAAKCYIMGESKPIVIDDAEKDAPVKDLRSNIACILNMSTAMPFKHFMNRFRCFYCPKDFTECDDLKQHTVMEHPLCDIKLKSMRLRNRKEEGIKVDTSSLSCKLCFESMTDLDVLTDHIISEHKAKYDKSIPSVLQPFKLIKENFPCPFCGVAYGYFSTLLKHVSKDHSDNRKICVYCGESFRSDPNLRAHITRHHRSARYKCNLCDSEFINNNDLQLHSGRKHGVKVANCPQCPEKFISRYRMHRHLIDAHGTGHKCSYCGNLFTRHSFMMSHVRRLHLKEKNVECSVCFERFFDGQRLKMHMIKHIGERNFHCDFCGKKFLWKKNLRGHMASHIKHANIQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00027997;
- 90% Identity
- iTF_00027997;
- 80% Identity
- -