Aher004096.2
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- Rfx2
- Assembly
- GCA_963693445.1
- Location
- OY856310.1:2756053-2777770[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 7.8e+02 1.5 0.0 3 17 197 211 196 216 0.86 2 3 5.9e-37 4.3e-33 114.4 0.0 3 78 221 296 219 297 0.97 3 3 1.8 1.3e+04 -2.5 0.0 24 33 626 635 610 645 0.69
Sequence Information
- Coding Sequence
- ATGATGGTAATGTTTGTTGCAGACTTTGAGTGCGCGGGCGACGAGGTGCTAGTGGAGTCGTCGCCGCCCGCCTCGCCTGACATGGCGGCGCGGCTCGCACAGCCTACACAGGcagcgggcgcgggcggcggggCGTCGCCGAGCGCTGTCCGGGAGCTGATCGTCATACCGGAGATACCGACCTCTATACATCTGCAGCATGCCATTCAACAGGTTTCCAGCACGGTGGTGGAGGTGAACGGCGACAGCTCAGGGCAGTCCAGCCCCACTACTGAGGCCCAGCACGCTTACATAACCGTCGCAAGTGAGGGTGGGAATGGAGTCAACTACCATGTACAGTATGTGGAGCCACAGGAGATTTACACCCAAGGTCACCAGGGCCATATGGACACGCTGCGCTCGTACCCGGTGTACGGGGTGGCCACGGTCGGCGCGACCAGCACGGAGACCTCCGGCACCGACAACACGTGGGGCGGCGCCGCTTCTGCAGACTACACAGCTTACGGCGTCGTTGTGGCAGGCGACGACGCGGAGGCGCCGGCCTCGCCTGCGACCCCCGCGCCCGGCGCGCCCCCCCGCATGCCGCCCGCCACCGTGCAGTGGCTCCTCGACAACTACGAGACTGCTGAGGCCACCCCCGCGCCCCCCCGCATGCCGCCCGCCACCGTGCAGTGGCTCCTCGACAACTACGAGACTGCTGAGGGTGTGTCACTGCCGCGCTCGACGCTGTACTCGCACTACCTGCGGCACTGCACGGCGCACCGGCTGGACCCGGTGAACGCCGCGTCCTTCGGCAAGCTGATCCGCTCCGTGTTCATCGGCCTGCGCACGCGGCGGCTCGGCACGCGCGGCAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGGCCAGTgccggccactccccgccccggCACGACTCTGTCGACGACAAGACTGAGCTCGACCAGCAGGAACCCCGTGAGCGCGAGACTGAGCAGAGTCCTGTGGGCACGTCCAACGTGGCGCACCGCCAGTACCTGGGCACTGTGACCGCGCCCGACCCGCCGGAGCTGGTGCTGGACGAGTTGCCGCCCGAGGTGCCGCCCGGCGCGCTGCTCGCTCTGAGGAACCACCACCGAGAGCACGGAGTGGAGTTCCTGGAGGCGGTGGCGGCGCTGGACACCGCGGGGGTGGAGAGGGCTCGTCGCGCCTTCTGGCGCCGCCCCCCGCCCGAACTGTGCCGCCGCGTGCTCTGCAAGCTCACCGCCAAGAAGGAGGTGGCTGACTGGCTGAGGAAGGCGGAACTGGAGTTGTATCAGAAAGCCGTCGAGCTACTGCTGCCTGATGTACTGAGGCCCATTCCTCCGCAGTTAACTCAGTCGATCCGCAACTTCGCCAAGAGCCTGGAGTCAGCGCTGGCCGCGGGCGCCGGGGGAGCCCCCGCGCTGGCCGCGCGAGCGCAggcctccgccgccgccgcacTAGCAGCCGCCCTGCGCCGCTACACCTCCCTCAACCACCTCGCGCAGGCGGCCCGCGCCGTGCTGACCAACCACCACCAGATACAGCAGATGCTAGCGGATCTGAACCGCGTGGACTTCCGCGTGGTCCGCGAGCAAGCCGCGTGGGCCTGCTCGTGCGGCAGTGCACCCacggcccataggctggaggcTGACTTCAAGGCGACGCTAGGTCGGGGGGCCACGCTGGAGCAGTGGGCCGCGTGGCTGGAGAACTGCGTGCGGACCGCGCTGGCGGCCCACGAGCGCAGGCCCGACTACACGGCCCGCGCGCGCAGGCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCAGAGAGCTGACACTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCGCGTCGCCGCGCACTGCCACGCGCCTCCCATCGCCGTCATGCAACGCGCCCAGGAGGAAGAAGAAGAGATCCCGGAGGATTCTCGAGTGGAAGAGGAGCCGGACCCCGACGACCCGGACTGGGAGTGGGACGACGACGAGGAAGACGACGAGATAGAGTGCAAGAAGATCAAGCTGCAGTAA
- Protein Sequence
- MMVMFVADFECAGDEVLVESSPPASPDMAARLAQPTQAAGAGGGASPSAVRELIVIPEIPTSIHLQHAIQQVSSTVVEVNGDSSGQSSPTTEAQHAYITVASEGGNGVNYHVQYVEPQEIYTQGHQGHMDTLRSYPVYGVATVGATSTETSGTDNTWGGAASADYTAYGVVVAGDDAEAPASPATPAPGAPPRMPPATVQWLLDNYETAEATPAPPRMPPATVQWLLDNYETAEGVSLPRSTLYSHYLRHCTAHRLDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKASAGHSPPRHDSVDDKTELDQQEPRERETEQSPVGTSNVAHRQYLGTVTAPDPPELVLDELPPEVPPGALLALRNHHREHGVEFLEAVAALDTAGVERARRAFWRRPPPELCRRVLCKLTAKKEVADWLRKAELELYQKAVELLLPDVLRPIPPQLTQSIRNFAKSLESALAAGAGGAPALAARAQASAAAALAAALRRYTSLNHLAQAARAVLTNHHQIQQMLADLNRVDFRVVREQAAWACSCGSAPTAHRLEADFKATLGRGATLEQWAAWLENCVRTALAAHERRPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHCHAPPIAVMQRAQEEEEEIPEDSRVEEEPDPDDPDWEWDDDEEDDEIECKKIKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00806425;
- 90% Identity
- iTF_00026573;
- 80% Identity
- -