Aals011481.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- -
- Assembly
- GCA_963924505.1
- Location
- OZ004673.1:673610-678152[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-10 3.4e-07 30.3 0.0 4 39 178 214 175 218 0.90 2 4 1.7e-12 1.5e-09 37.9 0.2 1 39 229 267 229 270 0.94 3 4 1.2e-14 1e-11 44.8 0.0 2 45 285 329 284 329 0.96 4 4 2.4e-18 2.1e-15 56.6 0.0 1 43 336 379 336 380 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCAACGGACTGTTTCAAGTAAAATGCGAGCCGACATCAGAAGACGAAAACAGTAATTCGCAATTTACGcacatttattttagtaatcagGTTTCGTCTGAACTCCGTCCTGTGAAATTAGAGCCGGATTGTCAAAGCAACGAAAATGTACCCTCCGATATTTTGCATCATCTacagGGTGGGCTGGAGGTACTCGCGCCGGCGGGGCCGGCCGCGACGCCGGTGCGCGTGAAGGCGGAGCGCGAGCCCGCCGCCACGCCGCCCGCCATGCTCGAGGTGCTCCAGTCCGCGCCCAATGCTAACTCCACCAAGGGTTCCACGTTGCTCGACCGTCACATGGCGATGCTGAGCGCAACCGAAGTGCCTGACTCCACCGACTTCATGCCGCTGCTGGCTGTCAAAGATGAACCTGTCTCTGAAGGTGAGCAACAGACGCAGAGCGGGGACGACACGAGCGACTCGTCGACGCCGGCCGACGCGCCGCGCGTTCCGGGGCTCGTGGGACCCAAGAGCTGGACCCAGCGCGACATGGACAACGCGCTCGACGCGCTACGGAAACACAACATGAGCCTCACTAAGGCATCGGCAATGTTCGGCATCCCGTCCACGACGCTGTGGCAGCGCGCGCACCGTCTCGGCATCGACACGCCGAAGAAGGAGGGCGCCGCCAAGTCGTGGAGCGAGGACGACCTGCGGCAGGCCCTACACGCGCTGCGGGCCGGGGCCATCTCCGCTAACAAGGCTAGTAAGGCTTACGGCATCCCGAGCAGCACGTTGTACAAGATAGCGCGGCGCGAGGGCATCCGGCTCGCGGCGCCGTTCAACGCGGCGCCCACCGCCTGGCGCCGCGCCGACCTCACGCGCGCGCTCGGAGCCATCCGCGCCGGCGACGCCTCCGTGCAGCGCGCCGCCTCGCTGTTCGGCATTCCCACCGGCACATTGTACGGGCGGTGCAAACGAGAAGGTATTGAGTTGTCTCGCTCCAACCCCACGCCATGGTCCGAGGATGCCATGGGAGAAGCATTAGAAGCTGTGAGGGTGGGCCAGATGTCCATCAACCAGGCAGCAATCCACTATAACTTGCCGTACTCCTCGTTGTATGGACGATTCAAGAGATGCAAGTACCCTTCTCAGGGACACCAACCTCAGCAAGACATGCAGAAACCCAACGAAATGGAAACCCATCATATACAAGAATTAAACTACTACCCTCCGATGCCGTCCCACACGATACACCACCACCCCGAGCCAGAGCCCCTCATTCAATCATACATGCCCATGAATGAGCAAGAGACTATGCATGGTAACTATATGCAGGAACATTACAGTGGGCAGATGTATTACGCTCAGAGCTGTAATATGGCGAGTTGA
- Protein Sequence
- MPGNGLFQVKCEPTSEDENSNSQFTHIYFSNQVSSELRPVKLEPDCQSNENVPSDILHHLQGGLEVLAPAGPAATPVRVKAEREPAATPPAMLEVLQSAPNANSTKGSTLLDRHMAMLSATEVPDSTDFMPLLAVKDEPVSEGEQQTQSGDDTSDSSTPADAPRVPGLVGPKSWTQRDMDNALDALRKHNMSLTKASAMFGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEDDLRQALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLTRALGAIRAGDASVQRAASLFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYPSQGHQPQQDMQKPNEMETHHIQELNYYPPMPSHTIHHHPEPEPLIQSYMPMNEQETMHGNYMQEHYSGQMYYAQSCNMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00027679;
- 90% Identity
- iTF_00027679;
- 80% Identity
- -