Basic Information

Insect: Agapostemon virescens
Gene Symbol: stc
Assembly: GCA_028453745.1
Location: CM052091.1:17281212-17285840[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 3e+04 -4.4 1.6 15 19 563 567 562 567 0.81

2 13 0.085 1.3e+03 0.3 0.4 4 10 596 602 595 602 0.95

3 13 1.2e-05 0.18 12.6 13.0 4 18 613 627 611 628 0.94

4 13 2.7e-08 0.00041 21.0 16.9 1 18 664 681 664 682 0.97

5 13 1.4 2.1e+04 -3.6 0.8 6 10 710 714 709 714 0.88

6 13 1e-09 1.6e-05 25.6 12.6 1 19 720 738 720 738 0.98

7 13 2.5e-05 0.38 11.5 11.3 4 18 785 799 778 800 0.86

8 13 2 3e+04 -4.7 1.6 5 10 829 834 829 834 0.90

9 13 0.00059 9 7.2 8.4 1 11 840 850 840 851 0.97

10 13 1.2e-10 1.9e-06 28.5 14.3 1 19 867 885 867 885 0.98

11 13 2 3e+04 -6.7 8.9 10 19 932 942 921 942 0.77

12 13 1.5e-05 0.22 12.3 18.5 1 16 978 993 978 1004 0.86

13 13 2.5e-05 0.38 11.5 11.2 1 19 1010 1029 1010 1029 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	3e+04	-4.4	1.6	15	19	563	567	562	567	0.81
2	13	0.085	1.3e+03	0.3	0.4	4	10	596	602	595	602	0.95
3	13	1.2e-05	0.18	12.6	13.0	4	18	613	627	611	628	0.94
4	13	2.7e-08	0.00041	21.0	16.9	1	18	664	681	664	682	0.97
5	13	1.4	2.1e+04	-3.6	0.8	6	10	710	714	709	714	0.88
6	13	1e-09	1.6e-05	25.6	12.6	1	19	720	738	720	738	0.98
7	13	2.5e-05	0.38	11.5	11.3	4	18	785	799	778	800	0.86
8	13	2	3e+04	-4.7	1.6	5	10	829	834	829	834	0.90
9	13	0.00059	9	7.2	8.4	1	11	840	850	840	851	0.97
10	13	1.2e-10	1.9e-06	28.5	14.3	1	19	867	885	867	885	0.98
11	13	2	3e+04	-6.7	8.9	10	19	932	942	921	942	0.77
12	13	1.5e-05	0.22	12.3	18.5	1	16	978	993	978	1004	0.86
13	13	2.5e-05	0.38	11.5	11.2	1	19	1010	1029	1010	1029	0.95

Sequence Information

Coding Sequence: ATGGCTACATGGGATGGTTCGTATTGCGAGCCGGACGATCAACATTTTTACTTATATTCTGATCAAAATGTTGCTGCCTCTACAACCGGAAGCTGGACATTTTCCCCGAACGGTGTAACCAACGCTTATACACGAGAAAATCGTGAATTTTATGTAGAAAATGATTCTGTATTCCATCAAAATTGTCCAAATACTTTATATCATTCGAACACGAATGTAATGCCAAACATCGTGACAAGCGGTCGTGGTTACCAGGATCATTTAAGAAATACCATAGATAATTCGCAAGCATCGACTAATATGCAACACTCGCCAAAAACCGTAAAGCCACAAAATTGTTTTGCACCTGCTGTCAATTACTGGAGCAACAATTACGATGCGAATGCGATCAAGATTAAGCATAGTTATGCAAAAGAAACAAAACAAATTGCAACCTTAGTAAAAAAAGAGTCAAATTTGCATCCTACAGCTCGAGAATTTGTACCGAATTTGAATTCTAAGTCTGCTAATAAGAAACAGGAATTGCAAAATATGGAACTTCCTTGTTCTATTAATCATGTCGACTGTTATGCAAGACATACAAAACTTATGGAAGTAGAAGCGGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATACAGTAACCATCAATAGACATTCCATCAATAATGTAAATAAAAGTGAACAAAAACAATATGAGAACAAAAAGAATCATAAGGTCAAGGAAGGACATGATCAATTTTATAAAAAAAATAGATATACAAACTCGTATCATCGGAGAAGCAGAAGTTCTTACAAGTTTCAAGGTAATAAATATTATACCAATAGACATTATTCCGACAGGTTGCAAACAGATATAGAAGACTCGCCTAACTTAAACAAGGAAGAATCATATTCTAGTGTGGAAACAAATCTACACAGGAATAAAAAATTACCAATAGAAAACAGGGATAAAAGAAGCCCCATTACCAAAGACAATAACGTAGAGTCCAACAATCAAGACAGAGAATTTACATATTCCATTTCGAGTCATGGGTCAAAACAATCTAATACGTACCACAAAAATGCTAGGAAATATCCATATAATACTAGACATAATAGAGAAGAATACAATTACAGAGAAAGAAGCCATAATTATCAAGGGCAAATTGGAACTTGGCAAGGGCACGTCATCGAAGACAAACAAGGGGATAGGTACGAACAAGCATGCAATCGTATAGATCCTAATGAAACTAAGCAAGATGTTAGCGAAGAAGCTAATAAAGTTGAAGTAAAAGAAACTAAAGAGAGGGGATACAATTATCAAGGACGCAATGGATTGAAAGAACACAGGAGAGGAAACAAAATCGAAGCGTTCAGAGAGAAGGATAGAAACAAAATTAGTATATTCGATAATAAAGAGAAGGAAAAGGAAAATGAAAATTGGAGAAATAAGGGAGAAATTAGCGAGAAAGGCAGTATTCAGAAACGAATACAAAACAGAAGATCTCCGCTTGACGACGACGCAAGTCAAAGAGAAAGACTGACCGATCAATTAAACAGAGGACAATTGGAATGTTTAGTGTGTTGCGAGTGGATTAGACAGAACGATTATATTTGGTCGTGTTCTAATTGTTATCATGTTTTACACCTAAAGTGTGTTAAAAAATGGGCAAAATCTTCGCAAGCAGATAATGGTTGGAGATGTCCAGCATGTCAGAATGTAAGTATAACAATTCCCAATGAGTATTTCTGCTTCTGCGGCAAGACAAAAACTCCAGAATGGAATCGTAGAGATGCTGCGCATTCTTGCGGAGAAGTTTGCAATAGGACATTATCAAAAAATACTTGTCCTCATAAGTGTACTTTTCTCTGTCATCCTGGATCTTGTCCGCAATGCGTAGCAATGATTACAAGGTATTGTGGATGTGGTAAAACACTGCAAATGGTACAGTGTAGCACACACAAGCTATTGTTATGCGACGCCACGTGCGGTAAGAGTCTAAATTGTGGCATGCATAAATGTGAGAAAAAGTGTCATCATGGAGAATGTCCAAGTTGCGAAGAAACAGTTGAGCAAGAATGTTATTGCGGCAAAGACAAGAGAAAAGTAACTTGTCAAAGTGACATTTCAGTTATGTACTCTTGCAAAAGTGTTTGCGATAAATTATTAGATTGTGGGAATCATAAGTGCGCAAAGCTATGCCATCCAGGTGTTTGCGACCCATGTAGTTTGACTCCAGAGAAAGTGACAACCTGCTGCTGTGGCCAAACATCACTGGCAGAGAAACGACAAACTTGTTTAGACCCAATTCCGGTTTGCGACAAAGTATGTTCGAAAAGTCTAAAATGTGGTCAACCGAATAATCCCCACGTATGCAAAGTAACATGTCACAAAGGAGATTGTCCTATTTGTGATTTGACTACATACGTGAAGTGTCGTTGCGGAAATATGGATAGAGAAATAGCTTGTAAAGATTTAATATCAAAAGCTGACGATGCTCGATGTGAAAAAAGGTGCACAAAAAAAAGATCATGCGGCAAGCACAAATGTAATCAGTTGTGTTGCATAGAAGTAGAACACGTTTGTCCGTTGATGTGTTCTAAAACTTTAAGCTGCGGTAAACACAAATGCGAACAAACTTGTCATAAAGGAAGATGCCAACCTTGTTGGCGTAGTAGCTTCGAAGAATTGTATTGCGAATGCGAAGCTGCTGTGATATATCCTCCAGTACCCTGTGGTACTAGAAGACCCGTTTGCGATAGGCCTTGTTCTCGTCAGCATTCCTGTGGACACGAAGTGTTTCATAATTGTCATAACGAGCCTACGTGTCCTCCCTGCACTGTCCTTACTCAAAGGTGGTGTCACGGCAAACACGAGCTTCGCAAAGCTGTACCGTGTCACTTTAATGGAATTTCGTGCGGTTTGCCATGCAACAAGCCTATTTCTTGCGGTCGACACAAATGTCTCGCAATTTGCCATCCTGGCCCGTGCGAAAAACCCGGACAACAATGTTGTCAACCGTGTACCATTCCAAGAGAAATGTGTGGACACATTTGCGCCGCTCCGTGTCACGACGGTAAATGTCTGGACACGCCGTGCAAAGAAATGGTGAAGgtaacatgtcaatgcggccatagaactacatctcgcgcttgtgccgagaattcgaaggaatatcagagaattgcgagcagcatactagctagtaaaatggctgatatgcaactaggacattcggttgatttggaagaggtgttcggtcaaggagcaaaaaaacagaatcaattgaaaacattagaatgtaacgatgaatgcagattgatagaacgaaatcgaagattagcgttaggtttacaaattgtaaacccggatttgagtggaaaattaatgcctagatatagcgaTTTCATGGAACAGTGGGCAAAGAAAGACCCACTCTTTTGTCAAATGGTCCATGAAAAATTGACAGAATTGGTTCAATTAGCAAAGACCTCGAAACAAAAATCGCGCAGCTATTCGTTTGATAGCATGAATAAAGATAGACGTCATTTTATTCACGAATCCTGCGAGCACTTTGGGTGTGAAAGTCAAGCATACGATCAAGAGCCTAAAAGAAATGTTGTTGCTACAGCTGTAAAGGATAAGtgttggttaccaagctatagtttgttggaaattgtgcaacgaaaaaacggtcagagaaaagttcctggtccaatgTTGAATACTTCAAAAGCTAATGGATCTGTAAAAACGATATTGTCACTGCCTACAAAAAAGAACCAAAAACTAGAACTACCGTCATATACAAGAATGCCGGAACCAGAAGCAGAATCAGAGTCAGAACCAGAACCAGAAATCGACTACTTCGATTACAAGGGTTAA
Protein Sequence: MATWDGSYCEPDDQHFYLYSDQNVAASTTGSWTFSPNGVTNAYTRENREFYVENDSVFHQNCPNTLYHSNTNVMPNIVTSGRGYQDHLRNTIDNSQASTNMQHSPKTVKPQNCFAPAVNYWSNNYDANAIKIKHSYAKETKQIATLVKKESNLHPTAREFVPNLNSKSANKKQELQNMELPCSINHVDCYARHTKLMEVEAEAEEEEEEEEEDTVTINRHSINNVNKSEQKQYENKKNHKVKEGHDQFYKKNRYTNSYHRRSRSSYKFQGNKYYTNRHYSDRLQTDIEDSPNLNKEESYSSVETNLHRNKKLPIENRDKRSPITKDNNVESNNQDREFTYSISSHGSKQSNTYHKNARKYPYNTRHNREEYNYRERSHNYQGQIGTWQGHVIEDKQGDRYEQACNRIDPNETKQDVSEEANKVEVKETKERGYNYQGRNGLKEHRRGNKIEAFREKDRNKISIFDNKEKEKENENWRNKGEISEKGSIQKRIQNRRSPLDDDASQRERLTDQLNRGQLECLVCCEWIRQNDYIWSCSNCYHVLHLKCVKKWAKSSQADNGWRCPACQNVSITIPNEYFCFCGKTKTPEWNRRDAAHSCGEVCNRTLSKNTCPHKCTFLCHPGSCPQCVAMITRYCGCGKTLQMVQCSTHKLLLCDATCGKSLNCGMHKCEKKCHHGECPSCEETVEQECYCGKDKRKVTCQSDISVMYSCKSVCDKLLDCGNHKCAKLCHPGVCDPCSLTPEKVTTCCCGQTSLAEKRQTCLDPIPVCDKVCSKSLKCGQPNNPHVCKVTCHKGDCPICDLTTYVKCRCGNMDREIACKDLISKADDARCEKRCTKKRSCGKHKCNQLCCIEVEHVCPLMCSKTLSCGKHKCEQTCHKGRCQPCWRSSFEELYCECEAAVIYPPVPCGTRRPVCDRPCSRQHSCGHEVFHNCHNEPTCPPCTVLTQRWCHGKHELRKAVPCHFNGISCGLPCNKPISCGRHKCLAICHPGPCEKPGQQCCQPCTIPREMCGHICAAPCHDGKCLDTPCKEMVKVTCQCGHRTTSRACAENSKEYQRIASSILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECRLIERNRRLALGLQIVNPDLSGKLMPRYSDFMEQWAKKDPLFCQMVHEKLTELVQLAKTSKQKSRSYSFDSMNKDRRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRKNGQRKVPGPMLNTSKANGSVKTILSLPTKKNQKLELPSYTRMPEPEAESESEPEPEIDYFDYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00867078;
90% Identity: -
80% Identity: -