Avir023836.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- prdm10
- Assembly
- GCA_028453745.1
- Location
- CM052096.1:2307417-2311281[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.017 2.4 9.5 0.0 2 23 519 540 518 540 0.91 2 11 0.00058 0.08 14.1 0.1 3 23 554 574 552 574 0.95 3 11 0.0082 1.1 10.5 3.8 1 23 591 613 591 613 0.91 4 11 0.0054 0.75 11.1 2.6 2 23 622 643 621 643 0.96 5 11 0.0011 0.15 13.3 0.2 1 23 650 672 650 672 0.98 6 11 0.34 47 5.4 4.4 1 23 679 701 679 702 0.94 7 11 0.00064 0.089 14.0 1.7 1 23 707 729 707 729 0.98 8 11 2.1e-05 0.003 18.6 4.1 1 23 735 758 735 758 0.96 9 11 0.0015 0.21 12.8 1.7 1 23 791 814 791 814 0.97 10 11 3.4e-05 0.0047 18.0 2.4 1 23 836 859 836 859 0.97 11 11 0.0014 0.19 13.0 3.4 2 23 896 918 895 918 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGTTAATTCCTTTGAGATTTCAACCATTGACAAAGTGTCCGACACCTCGGTAAATTGGCCAGCGGATCATTCCCTCCACTCGTCGGTGTGCGACCAATCCAAAAAGATGAGCAACAAGCTGCTATTCCTGACCGTGGAGTACGTGGAAGATCAGTCCAGGGAATATCCTCGACTGTTTCCAACTTACGAACAGGTCTCCTTTTCCCCTAGAGCTACCTCCCCGCTCTCAGATTTCGAGCATCGCGTCAGTCCTCTTGACCCCAATATGAGTTCAGCAGCTAGGTATTCGCCTACCCCTGTACAGCTTCCGCCGTCTCCTTTTCATAATTCTGTTGTTGTTCTGCAAGGTCCGTCTTCCCCTTTAATATCCCCACCCGAGTCCAATGAGAGAACCAACGCCAACTATGTCTCTCAGCTGACTCATCCGATCGACGCGCAGAATGCCCCGCAAACAGACAACACTCCAGACTTTGTTGCCAATGAAAATGAGGAACAGTTGGTCTCCAGCGTTGGCAGTGAACTGATATTGATGCAGGAGACTAATTCGGGATTAGAATCACCGGCGGCTCCGCTGATGCTAACGGGAATGCCTAGCACGGACTTCGCGCTGAGCAGAGACTTCCTGGTGATGCAGGAGGATCAAATGAACGTTATGAACTCGTTCAAGCCGCAGAATCTCGATGTGGACGATTCCACGTTGTCGTCGACCGCAGAGAATTCGAACAAAGAGAACAAGATGGATACTTTGGTAGAGCCAAAGGAGGAGATGAACGAAATTTTGCTGAACACCGACGAGAAGAACGAGAACGAGAAGCAGATCGTAAGACGCTCCAAGCGGCGCATAAACGATAAGAAAAATGCTTGCTGCGACGAGAGCGACGACGTTTGCACCGGTGACAATTGTCCATCGCACAACGTATGCACCATAGCGGATCAACCTGTACCGTCTCGTGCTATAGCAACACTGCCAGGATCGTACCTATCCATAAATAAATTATCCAGCATCGAAAACGGATCGGACGGATCAGACTACGGAGTATTCGCGAAACGTTATATACAAAAACGCACCCAATTCGGTCCGATAGAAGGAATCTTGTGTTCCTACGACGGTTCCCCGTTTAAAAACGAATTGCCGTTGCTGTATGAAACCGAGAACGAGGAACTGCTTAAAGTAGACGTCTCGAACGAAAATGCGTCGAATTGGATGCGTTTCGTCAGGCCTGCGTTAACGTACAAAGAGCAAAATTTGATCATCTGTCAGCAACGCGACGGAATAGTATTCCTGACGACGAGGCACATCCTACCGAAAGAAGAACTGAAGGCTGGCCCTAGTACCGATTACGCGATTCGCAGGAACTTGGCGTCGTTGAAACCCGTGCAAGAGGCTAAGGACGACAAAGAGTCGAAGAGTCAGTTGTTCTGGCCGCGGCTGGAGGACAATCATTCTCGCCGCGTGAAAGTGTTCCACGGGCGGAATTTAAAGGAGAAGGAGAACTCGAGGCAGAACAATTTGAAAGAGTGGATATGTTCGATTTGCGGACTAATCTTTCGGAAGCCGTTGTTGCTTAACTTGCACAGCCTTGCCCACGGCACGGAAAAGATCAAAACGAAAGCTCAGAGCACCGCTTGTCCGCAGTGCGGGCTGCGATTCCCGAAACAGAAGGAGCTGGTCAATCACGTCTCTCAACACGGACTGCTGTCGTTGGCGAAGACGAAGAGGTTGGCCTCGTTGTCCATGTACAAATGCTCGATGTGTTACAAACGTTTCGCCACGAAAGTACGGTTGCAACAGCACTGTCTGGTGCATGGCGCCGAAGACCAAAAACCACTGCCATGCAACATTTGCTTCAAACGGTTCATGAACAATTCGGCGCTGTCTTGCCACTTGAAAACGCATCGAGAGAACAAGCAAGTGTTCGAGTGCCCCATGTGCCGACAGCTGTTCAGCCAGAGCATCACGTTGAAAGGTCACATCGGTACTCATAAAAAGGAGGACGGCACCTTTTGCTGTCCTTACTGCCAACGAATATTTCTGAAATATTCCGTAATACGTAAGCACATTCGAGCCCATCATTGCGAGAGGAAACACAAGTGTCAGGTCTGCGCGAAACGCTTCGCCACCGTCGACAAACTGCAGATGCATCTTCTGAAGCACTCCGATCACAGGGAGTTTCACTGCGCCAACTGCGGCAAGCAATTCAAGAGGAAAGACAAGCTGAAAGAGCACATGACCAAACTGCACAATTCGCAAACGGCTACCGAGGAGCAAATATCGCAAATGACGCAGACAAAGAAATTCGTTCCGAAGGTGAATCCTAACGACTACAATCGCTTCATTTACAAGTGTCATCAATGCCTGGTAGGCTTTAAAAGAAGAGGAATGCTCGTGAACCACTTGGCGAAACGTCATCCCGAAGTTGCGCCGGAGTCTGTGCCGGAATTGAACTTGCCAATTTTACGGCAAACGAGGGACTATTACTGTCAATACTGCGACAAGGTCTACAAAAGCAGCAGCAAACGTAAAGCACATATCATGAAAAACCATCCGGGAGCTGCTTTGCCACCGAGCAACAGACAGAAGGAGTCCGACTGCTCGGATCTACCGAATCCAACGTTCAGTCAAACGGTCGGTAGTATCACCACCACGCCCCAGAGTTGTCAATGGTGCCACAAACAATATGCTAGCAAGGCGAAGTTGTTGCAACATCAACGTAAGAAGCACTCGAACCTGATGGAGCCGGCGGATCAACTGCCACGGTCCCGGAATCGACAGTCGCAGAACCAGAACCAACCGCCGGTGCTTATCGACGATCATTTCGTGCTGTCCGATTACATCCAAACGTGCGACACGAGCTCCGAGTTCTTCAAGCCGAAAATAATCAAACTGTCCGACGACGTTGATCTGATAAGCAACGGGTTGGAACTGGTCGGGGAACAGTTTGTTCGTATGCGCGACATACGTTGA
- Protein Sequence
- MDPRGPPEGAPVNSFEISTIDKVSDTSVNWPADHSLHSSVCDQSKKMSNKLLFLTVEYVEDQSREYPRLFPTYEQVSFSPRATSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGPSSPLISPPESNERTNANYVSQLTHPIDAQNAPQTDNTPDFVANENEEQLVSSVGSELILMQETNSGLESPAAPLMLTGMPSTDFALSRDFLVMQEDQMNVMNSFKPQNLDVDDSTLSSTAENSNKENKMDTLVEPKEEMNEILLNTDEKNENEKQIVRRSKRRINDKKNACCDESDDVCTGDNCPSHNVCTIADQPVPSRAIATLPGSYLSINKLSSIENGSDGSDYGVFAKRYIQKRTQFGPIEGILCSYDGSPFKNELPLLYETENEELLKVDVSNENASNWMRFVRPALTYKEQNLIICQQRDGIVFLTTRHILPKEELKAGPSTDYAIRRNLASLKPVQEAKDDKESKSQLFWPRLEDNHSRRVKVFHGRNLKEKENSRQNNLKEWICSICGLIFRKPLLLNLHSLAHGTEKIKTKAQSTACPQCGLRFPKQKELVNHVSQHGLLSLAKTKRLASLSMYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRENKQVFECPMCRQLFSQSITLKGHIGTHKKEDGTFCCPYCQRIFLKYSVIRKHIRAHHCERKHKCQVCAKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATEEQISQMTQTKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPEVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDCSDLPNPTFSQTVGSITTTPQSCQWCHKQYASKAKLLQHQRKKHSNLMEPADQLPRSRNRQSQNQNQPPVLIDDHFVLSDYIQTCDTSSEFFKPKIIKLSDDVDLISNGLELVGEQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00232789;
- 90% Identity
- iTF_00862781;
- 80% Identity
- -