Basic Information

Insect: Agapostemon virescens
Gene Symbol: ZNF236_1
Assembly: GCA_028453745.1
Location: CM052089.1:21261159-21269070[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 4.5e-05 0.0063 17.6 1.6 1 23 164 186 164 186 0.98

2 25 0.00011 0.015 16.4 1.1 1 23 192 214 192 214 0.98

3 25 1.5e-05 0.0021 19.1 1.2 2 23 220 241 220 241 0.97

4 25 0.0048 0.66 11.3 0.2 3 23 249 269 247 269 0.96

5 25 9.4e-05 0.013 16.6 1.1 2 23 280 301 280 301 0.98

6 25 7.9e-07 0.00011 23.2 1.1 1 23 322 344 322 344 0.99

7 25 6.2e-06 0.00086 20.3 0.7 1 20 350 369 350 372 0.95

8 25 1.8e-05 0.0026 18.9 0.4 1 23 378 401 378 401 0.95

9 25 0.00034 0.048 14.9 3.6 1 23 410 433 410 433 0.98

10 25 2e-06 0.00028 21.9 2.1 1 23 562 584 562 584 0.98

11 25 0.022 3.1 9.2 2.5 1 23 590 612 590 612 0.97

12 25 0.0034 0.47 11.7 2.1 1 23 618 640 618 640 0.97

13 25 0.0047 0.66 11.3 6.3 1 23 764 786 764 786 0.98

14 25 5e-05 0.0069 17.5 4.8 1 23 792 814 792 814 0.99

15 25 0.00022 0.031 15.5 0.8 3 23 822 842 820 842 0.97

16 25 0.0021 0.29 12.4 10.0 1 23 848 870 848 870 0.98

17 25 1.6 2.3e+02 3.3 2.1 2 23 1273 1294 1272 1294 0.95

18 25 0.0015 0.21 12.8 0.7 1 23 1300 1322 1300 1322 0.98

19 25 1.9e-07 2.6e-05 25.1 1.4 2 23 1422 1443 1421 1443 0.98

20 25 0.0003 0.042 15.0 3.5 1 23 1449 1471 1449 1471 0.99

21 25 0.00026 0.036 15.2 1.9 1 23 1477 1499 1477 1499 0.98

22 25 0.0042 0.58 11.4 4.2 1 23 1505 1527 1505 1527 0.98

23 25 1e-05 0.0014 19.7 0.5 2 23 1787 1808 1786 1808 0.97

24 25 3.3e-05 0.0046 18.1 3.6 1 23 1814 1836 1814 1836 0.98

25 25 4.2e-06 0.00059 20.9 1.6 1 23 1842 1865 1842 1865 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	4.5e-05	0.0063	17.6	1.6	1	23	164	186	164	186	0.98
2	25	0.00011	0.015	16.4	1.1	1	23	192	214	192	214	0.98
3	25	1.5e-05	0.0021	19.1	1.2	2	23	220	241	220	241	0.97
4	25	0.0048	0.66	11.3	0.2	3	23	249	269	247	269	0.96
5	25	9.4e-05	0.013	16.6	1.1	2	23	280	301	280	301	0.98
6	25	7.9e-07	0.00011	23.2	1.1	1	23	322	344	322	344	0.99
7	25	6.2e-06	0.00086	20.3	0.7	1	20	350	369	350	372	0.95
8	25	1.8e-05	0.0026	18.9	0.4	1	23	378	401	378	401	0.95
9	25	0.00034	0.048	14.9	3.6	1	23	410	433	410	433	0.98
10	25	2e-06	0.00028	21.9	2.1	1	23	562	584	562	584	0.98
11	25	0.022	3.1	9.2	2.5	1	23	590	612	590	612	0.97
12	25	0.0034	0.47	11.7	2.1	1	23	618	640	618	640	0.97
13	25	0.0047	0.66	11.3	6.3	1	23	764	786	764	786	0.98
14	25	5e-05	0.0069	17.5	4.8	1	23	792	814	792	814	0.99
15	25	0.00022	0.031	15.5	0.8	3	23	822	842	820	842	0.97
16	25	0.0021	0.29	12.4	10.0	1	23	848	870	848	870	0.98
17	25	1.6	2.3e+02	3.3	2.1	2	23	1273	1294	1272	1294	0.95
18	25	0.0015	0.21	12.8	0.7	1	23	1300	1322	1300	1322	0.98
19	25	1.9e-07	2.6e-05	25.1	1.4	2	23	1422	1443	1421	1443	0.98
20	25	0.0003	0.042	15.0	3.5	1	23	1449	1471	1449	1471	0.99
21	25	0.00026	0.036	15.2	1.9	1	23	1477	1499	1477	1499	0.98
22	25	0.0042	0.58	11.4	4.2	1	23	1505	1527	1505	1527	0.98
23	25	1e-05	0.0014	19.7	0.5	2	23	1787	1808	1786	1808	0.97
24	25	3.3e-05	0.0046	18.1	3.6	1	23	1814	1836	1814	1836	0.98
25	25	4.2e-06	0.00059	20.9	1.6	1	23	1842	1865	1842	1865	0.96

Sequence Information

Coding Sequence: ATGTTGACACCACACGCAATAATCGCAGAGCCTAATCCGGTCGCAGCACTACCAATGAATATTGTTGCAACCGAAGATGGTAGAACGTTATTAGCAGTAACAGAAGACAAAGACGGTCTATTGGAAGTTATCACAACACCGGTTACTCTTATCGGTGACAATGGTGCAGCCGCGTCGCTAATGGATATAAAAAATGTAAACGGTTGCTTGGTATTACATCCGTCTTCTCTTCAAATTGGTTTGGACACTGGCAAAAGTTTGGATTTAGAATTGCCCAAGCAAGGTGTCGGAGTCGATTCTGATGCACCTTGTCGAGTCAAAACCAAAGTAGGCTCTGATACGATAGCTTGTTTTCTTGATGACGAGTCTTCGTGGAAAGAGAAAAGCGACGAAATTTATAGAGAGAAGACGACTGCTACGATCGCTAGAACGAATAGTCCTGGAAGGCCTAAAAAGACCTCCGCCGTATCGTTGAATGATAAAGGAGGTTTCAGATGTGACATATGTCAGCAAGAATTTTCCAAGCAAGCATCCTATAAAAAACACATGGAGAATCATGCGGAAGAGAAGCCGCATCGCTGTCCAAAATGTTCAGCATCTTTTAATGTACCGACCAACTTTACTCTTCATATGGCTACGCATAATTCTGGTGATCCAAAGTGCCCCGAATGTAGTAAAAAGTTTACAAGAATGGCTAGCTTGAAATCTCATATGCTGTTACACGAAAAAGAAGAAAATTTGTTTTGCACAGAGTGTGAAGACGTTTTCTCGACCAAAGCTCAATTGGATGCGCATTTGAAACTTCACGGAGAAAAGTGGACAACTGAAGAAGCAAGGAAATGCAAACTGTGTAATAAACAGTTCAGGCAACCGGCACTGTATCGATTACATATTCGTGAACATTACAAGTTGCAGACAAAGGTAGTAAAGCAGACGAAAAGAGGGGCCAAACATAAAACGGTATACAAATGTACGATATGCTTAAAATCTTTCCAAAAGCCAAGCCAATTGATGCGTCACATTCGAGTGCATACGGGTGAGAAACCGTTCAAGTGTACGGTGTGCGGTCGTGCGTTCACGCAAAAAAGTTCTTTGCAAATTCATACATGGCAACACAATGGTATACGACCGCATGCTTGCGAGCTTTGTAACGCCAGATTCAGTCAAAAAGGCAATTTAAATGCTCATATAATGAGAGTACACAACGTGCCAGAGGGAGAGCCTATATACAGATGCAACTATTGTTCTTGTGTTTTTAAGAAACTTGGCAGCTTGAACGGTCATATGAAACGTATGCATACAGGAGTGAACGAGGACAGTGCCACCAGCAGATTTCCCCAATCGACCGACACCGTGGAATCGGACATTCGAGCGACGGTAAACAACGTTATAACACAACTTGCGTCTTTGGAATCGAACGCAGATGAAGTTAGAAATGGAAAACTGGAAAAATTTGGGGAGACCGCATTATTGGCAAATGCCGCTACCAAAAAAGATATTCTGCAACAAGCACTGAGAAATAGTGGTTTACCTAGTAGAAACAAAACATCGTCCGATGGTCCATCAGAAGCAAAAAAGCTGGATGCACGCACAAATTTCGTTACCTTGCTAGATCGAGCACCGGATAGCGGCACCAGAAAATACTTGACGATAAAGCAACGGTGTGTAGGAAACATAAGATGGTATGCATGTACTTTTTGCCATAAAGAGTTCAAAAAACCATCAGACCTGATACGCCATTTACGAGTGCATACGCAGGAAAAACCATTCAAGTGCATACACTGTTATCGTTCATTCGCTTTAAAGTCTACCATGATAGCGCACGAACGTACTCATACAGGTCCCAAGAAATATGCCTGCGGCACTTGCGATGAAACGTTCACATGCCACAGTAACTTGATTATTCATGCAAGATCGCACGGGAATTCTGATCAGTGTTTCAATATATTGGTTGGTAAAGGTAATAATCACAATCATGATCCTGATCCCGATCCCGATCCCGATCCCGATCCCGATTCCAATCCCAATCTCAATGCCAATAATAATGACGATAACGGTCAAGGTAATGTTGATATCAACATAACGGTCAACGTAGCCACTCGTTGCACCGATCGAGGAAAAATTAACGCAAACAGCAGGTCAAAAATGTCTCCGAAAACGGAAAGCTTTGCGCCTCAAGTGATATTGCCGGAACCGTTGGTAATCAGTGACTCCGGAAATAAGATATGCGTGACACAGATACCTTCGAAACAGCGTATTTACGATACGGCAATCGATCCGGCTAGGCCACATAAATGTTGGGTCTGCGAAGTGGCATTCCGAAAAATTAGTCATTTGAAGCAACACCATCGACGACACACCGGAGAACGTCCTTATCGGTGTTCCAAATGCGACAGGAGATTCACGTCAAACAGCGTTTTGAAATCGCATTTACATACGCACGAAGACTCTAGACCTTACGGGTGTTCAATTTGTACCGCGAAATTCTCTACGCAGAGTAGCATGAAGAGACATTTGGTTACTCATAGTAACAAACGACCGTTCATGTGTCCATATTGTCACAAGACGTTCAAGACTTGTGTTAATTGCCGGAAACATATGAAAATACACAAGCACGAATTGACGCAACGGCCACTGGAGCAACAGAAACTGTTATCGCAAGAACAGTCTGCCAATAAGTTGAACGCAACGGAGAACTCTAAAGAAAAGACAACGTCCGAGTTGTCTTGCTGCTCTTCGTCCAGTTTTCCTTCCGGCAACGTTAACGATGCTTCTCTCGACGTGACTGCGAATACAGGTATTGGTGCCGGCGGTACCATGGACGCAACAACTTCCACGCTGTCGGATAATCCGTTATCTTCTGTCAACTTGTCTTTCCAACAACGAATAGGATCAACCTTTCCGCATACTTTCCCGCATCAATTTCAAACTGTGATCGAGACGAAAGAGAAGATAGGACCACTTTTATCGACTAACTGCCCCACTTCAACGTCTTTAGATcAGAATATGACTGAAATAACCATGACGAATTTAGAAAATCCACAGATGTTGCATATCGACGAAAGCGGTTCGGTAACGTTGCCAGTTTATTCGACCGATCAAGCATTAACACCGGAGAGCATACAAGAAATCGAGGAAACGTTGAACCAACAGCTTTACAACATCGGAATGAATCTTGGCTTGGGGAGCGACCATTCAAAACATTCCTGCGATACCAATGAATTGCAGAATGTGAAATTACAACATCAACAACCCGCGTTGAATGTCATTTACACGAGCAACAACAATTCTAATAACGATAACAACACGGAACAACAGTCCGAAGAGCAAGTATTCGTGTCGCAGCTAGATTCGTTCGAGATGGATCACATTACATTGCAACCGGAAGCTGAAATGACACTGGACAATATCGGCCTAGAAAGAAATAATTCAACGAGTATGGCAAGCATATTACAGCAAAGTGTAAAAGGAGGAGAGTTATCGAATCAACTTGCCATATCTGCTGTTTCGGCTGAGAATTTGACCGATGTTCATCAAGCAAGTGGGTACATGCAGACCGTATTGCTAATTTCCGAGCAAAATCTTGCGGGAAAAGGAAATGTGATCGACCAATTGAAAATTCACGAGACCGAAAAGAAAGCGGGTGAAGGACGATGCGTCGTCAACGATCCAACGTTCTTGACAGAAGAGTTTCGGAGGACATCCAAGGTTTCGTCAAAGAGCCAGAGAGTCTCTTTGTCGTTCGAGTCGTCTCTTTGTCATGAGACGAATGATGAAATTGACGCGAATCGATCGCCACAGGAAGAGTCTTTGTTGCAGTGTCATATGTGCAGCCAACAAGGATTTACAACAATCAAGTTAAAGGAGCACTTGAAGATCCATCGCGGGAAGAAAGAGTATCAGTGTGCAGAATGCTCTTCGAGATTTTATACGAACGGCGGATTAAATAGACACTCGAAAATACATACGAATAAACAACACTTGAAAAATAGTTCGCCGTGCGAAAAATACCTTTGCGATAAAACGCAATCGCGATCGCACAGCAGGGTCCATGAAGGTTTCGCATGGAACGAGAAGGACGTGTCAATTTTGTCGCAAATACAAACGACGGTAGCGAACGAATCGTCGTTGAACGATGTCGCGATAGATTCCGATTCGACCGTGTCCGAAAGAGTTCTGCTGGATACGGTTGCGGAACGAGAAGTGATGGATCGAGTACAGCACCTAGCAACGGAGAAAATAGAACGAAAGGAGTATACGAATAAATGTAAATATTGTCCGAAAACTTTTCGCAAGCCAAGCGATCTCGTTAGACATGTCCGTACGCACACGGGGGAACGTCCATATAAGTGTGACTATTGTAACAAAAGTTTCGCTGTAAAGTGCACGTTGGACTCTCATACCAAAGTTCATACCGGCAAAAAAACGTTTCGTTGTCACGTGTGTAGCAGTTTATTCGCAACAAAGGGCAGCTTGAAAGTTCATATGCGTTTGCATACAGGTTCGAAACCGTTTAAATGTTCTATGTGCGATTCGAGGTTCCGAACCTCGGGCCATAGAAAAGTACATTTGTTGAAACACGCGCGAGAGCACAAAGGTAATTTCAAGAGGAAACAAAAACATTTGAAAGTTGCTGCCATAGCAGAGGTCGCGATGGCAACAGACATTGAGAAATCTGGCGATGCTGGTCTACAAAAAGTGTGTAGCTACAGGCAAGAACAAGAACCGCAACCACAACCGCAACCGCAACCGCAACCGCAACAGCAAAATGAACAACAACAACAACAGCTCCAAGAGCGGCAGTATAATCACCACCACTATGAGCAAACATCGCAAATAACAGAAACAGAATATTCGAATTTACAAGCAATTAACGTCGAAACAACTGCTTCGTGTTTGACCGACCAAATTACGTTCGAGTCGGAGGGATCCGTTCCAAACAACAATTCGATACTATCTGTAAATGAAGGTAATCAGTTAGTGGCTAACTTACATTTTCTTCTAGCGAACGGTTTCGTTACCATACAGACCGCAGAGTCGTTAATACCACAGTCGATACCAGCTAGCAATACGCTGCATCAACATTCGACCATTGTCGCCGATTCCGTCTGCACTTCGATGATCAATATTACGCCTGAGATCGGTAGCAATCAAACTGTTGACGCTAAAGAAACTATTCACATGGAAAACGCGTTAAAAGCACAGTTATCATCTCCGTATCAATTGCAGTCGAATAACTGCATTTTAACGAGCGTTACTGCACCATCACGGATGGAACAGTTCGCAAAGGTTTCGACTGTTGAGAAGTGTTTGTCAACACCGGACAAATCCTCTTCCAAAGGAAATCCATCGAAGAAAGAGTGCGATGTTTGTGGGAAAATGTTCACAAAACCGTATCAAGTTGAACGTCATAAACGAATTCATACGGGCGAACGACCGTACAAGTGCGATTTATGCGTCAAGTCGTTCGCACAAAAATCCACGTTGCAGATGCATCAAAAACACCATACAGGTGATCGACCGCATCCTTGTCCCCGTTGCGAATATTCTTTTACGCAAAAAGGCAATCTTCGCACGCACATGAGTCGCGTTCATCGGTTAGATACTGTCGACTCGAAAAAAACTAAATATAATTTAAAGTCGTTGCAACGCAAATCTTCGCAAACTAATTTGACTGAAGTTAAAAGTCTGAACTTAGATGACATATCGTTCATTGAATTTCTCAAATAA
Protein Sequence: MLTPHAIIAEPNPVAALPMNIVATEDGRTLLAVTEDKDGLLEVITTPVTLIGDNGAAASLMDIKNVNGCLVLHPSSLQIGLDTGKSLDLELPKQGVGVDSDAPCRVKTKVGSDTIACFLDDESSWKEKSDEIYREKTTATIARTNSPGRPKKTSAVSLNDKGGFRCDICQQEFSKQASYKKHMENHAEEKPHRCPKCSASFNVPTNFTLHMATHNSGDPKCPECSKKFTRMASLKSHMLLHEKEENLFCTECEDVFSTKAQLDAHLKLHGEKWTTEEARKCKLCNKQFRQPALYRLHIREHYKLQTKVVKQTKRGAKHKTVYKCTICLKSFQKPSQLMRHIRVHTGEKPFKCTVCGRAFTQKSSLQIHTWQHNGIRPHACELCNARFSQKGNLNAHIMRVHNVPEGEPIYRCNYCSCVFKKLGSLNGHMKRMHTGVNEDSATSRFPQSTDTVESDIRATVNNVITQLASLESNADEVRNGKLEKFGETALLANAATKKDILQQALRNSGLPSRNKTSSDGPSEAKKLDARTNFVTLLDRAPDSGTRKYLTIKQRCVGNIRWYACTFCHKEFKKPSDLIRHLRVHTQEKPFKCIHCYRSFALKSTMIAHERTHTGPKKYACGTCDETFTCHSNLIIHARSHGNSDQCFNILVGKGNNHNHDPDPDPDPDPDPDSNPNLNANNNDDNGQGNVDINITVNVATRCTDRGKINANSRSKMSPKTESFAPQVILPEPLVISDSGNKICVTQIPSKQRIYDTAIDPARPHKCWVCEVAFRKISHLKQHHRRHTGERPYRCSKCDRRFTSNSVLKSHLHTHEDSRPYGCSICTAKFSTQSSMKRHLVTHSNKRPFMCPYCHKTFKTCVNCRKHMKIHKHELTQRPLEQQKLLSQEQSANKLNATENSKEKTTSELSCCSSSSFPSGNVNDASLDVTANTGIGAGGTMDATTSTLSDNPLSSVNLSFQQRIGSTFPHTFPHQFQTVIETKEKIGPLLSTNCPTSTSLDQNMTEITMTNLENPQMLHIDESGSVTLPVYSTDQALTPESIQEIEETLNQQLYNIGMNLGLGSDHSKHSCDTNELQNVKLQHQQPALNVIYTSNNNSNNDNNTEQQSEEQVFVSQLDSFEMDHITLQPEAEMTLDNIGLERNNSTSMASILQQSVKGGELSNQLAISAVSAENLTDVHQASGYMQTVLLISEQNLAGKGNVIDQLKIHETEKKAGEGRCVVNDPTFLTEEFRRTSKVSSKSQRVSLSFESSLCHETNDEIDANRSPQEESLLQCHMCSQQGFTTIKLKEHLKIHRGKKEYQCAECSSRFYTNGGLNRHSKIHTNKQHLKNSSPCEKYLCDKTQSRSHSRVHEGFAWNEKDVSILSQIQTTVANESSLNDVAIDSDSTVSERVLLDTVAEREVMDRVQHLATEKIERKEYTNKCKYCPKTFRKPSDLVRHVRTHTGERPYKCDYCNKSFAVKCTLDSHTKVHTGKKTFRCHVCSSLFATKGSLKVHMRLHTGSKPFKCSMCDSRFRTSGHRKVHLLKHAREHKGNFKRKQKHLKVAAIAEVAMATDIEKSGDAGLQKVCSYRQEQEPQPQPQPQPQPQQQNEQQQQQLQERQYNHHHYEQTSQITETEYSNLQAINVETTASCLTDQITFESEGSVPNNNSILSVNEGNQLVANLHFLLANGFVTIQTAESLIPQSIPASNTLHQHSTIVADSVCTSMINITPEIGSNQTVDAKETIHMENALKAQLSSPYQLQSNNCILTSVTAPSRMEQFAKVSTVEKCLSTPDKSSSKGNPSKKECDVCGKMFTKPYQVERHKRIHTGERPYKCDLCVKSFAQKSTLQMHQKHHTGDRPHPCPRCEYSFTQKGNLRTHMSRVHRLDTVDSKKTKYNLKSLQRKSSQTNLTEVKSLNLDDISFIEFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763369;
90% Identity: -
80% Identity: -