Avir025899.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- dmd-4
- Assembly
- GCA_028453745.1
- Location
- CM052084.1:11672686-11676850[+]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-26 3.5e-22 78.7 10.3 1 47 23 69 23 69 0.99 2 2 0.58 3.5e+03 -1.3 0.6 3 9 367 373 366 375 0.77
Sequence Information
- Coding Sequence
- ATGCTGCGAGGGAAGAGCAGAAGCAAGCCGGAGAACGAGGACGAAGAAGATGGCCAGACCAAGCAGAGAAGACCGAAGTGTGCACGTTGCAGGAACCATGGGCTGATCTCGTGGCTTAGGGGACACAAGAGAGAATGCCGGTACCGAGACTGTCTTTGCCCCAAGTGCTCCTTGATCGCGGAAAGGCAGAGAGTAATGGCGGCGCAGGTGGCACTGAAGAGGCAACAGGCAGCCGAGGATGCGATCGCCCTGAAAATGGCCAAGGTGGCCACCGGACAGAAACTGAATCGGTTACCGCCGGGCAAGATTTTCGGTATGGCGGTCACCGAGCCTAAGTCGTCCACCGACGCCGAGAAACAGAGACGCTCGCCCGAACAGGGACAACAGACGTCCGGGGATGCGAAGAAGGAGGACACTTCCAAGATACAAGTTCAAGAACCTCCTACGAGACGTCCAAGCGTCCTTTTATCCGAGATACAGTGTCCATATTGTCCGCAGCCCGGCGAGAATCTGGCGAAGTTGAAGAACCTGGTGTTCAACGGCGGCAAGCAGGAAGAGTCGAAAGAGAGCAACGTGTCCCAGACCTCGGTGGACACACTGGCTCGGCTGTTCCCCAACACGAAGCTGTCGGTGCTGCAACTGGTGTTGCAGAGGTGTGGCCAGGACCTGTTGAAAGCGATAGAGTACTTCGCCAGCGACAGCCTTGGCATCGGTTCAACCGCCTACGCGTCGGCCTTCCGGCCACCCAGCCAGAGCATCAATGAAACTCGGTCGAACGACCAACTGACCGGCTCCATGCTAGCCCCTATCTACTCGAACCTCTCCAGGAGTCTCTACAGCGACAGCTATTGCGTGCTGAACATCATCCCCGACCAATTCCCGAAGAGCATCGTGACGGACTCCGCCACCTGTACAGCGTTACCCAAGCACGATCAAGACAGCGTCGCTCTGAACGTCCAATACAACAGCTACTTCAACGCTGGCCTGCAACAACAGATCAGGGATCACGTCTACGCCCAAGTCACAGAGCATCTTCCGTCCAGACCGGGATTCCTTCATCTGCCACCCATCATGCCTGGGATGCCCCCCTGCGTGCAGCCTAACTGCACCCAGTGTACCTACAAGTTTCCTTAA
- Protein Sequence
- MLRGKSRSKPENEDEEDGQTKQRRPKCARCRNHGLISWLRGHKRECRYRDCLCPKCSLIAERQRVMAAQVALKRQQAAEDAIALKMAKVATGQKLNRLPPGKIFGMAVTEPKSSTDAEKQRRSPEQGQQTSGDAKKEDTSKIQVQEPPTRRPSVLLSEIQCPYCPQPGENLAKLKNLVFNGGKQEESKESNVSQTSVDTLARLFPNTKLSVLQLVLQRCGQDLLKAIEYFASDSLGIGSTAYASAFRPPSQSINETRSNDQLTGSMLAPIYSNLSRSLYSDSYCVLNIIPDQFPKSIVTDSATCTALPKHDQDSVALNVQYNSYFNAGLQQQIRDHVYAQVTEHLPSRPGFLHLPPIMPGMPPCVQPNCTQCTYKFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00183966;
- 90% Identity
- -
- 80% Identity
- -