Avir018452.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- -
- Assembly
- GCA_028453745.1
- Location
- CM052099.1:1852666-1861411[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.3 1.1e+04 -3.1 0.1 28 40 51 63 51 66 0.64 2 5 8e-13 1.7e-09 37.9 0.0 1 39 283 322 283 326 0.90 3 5 2.5e-12 5.3e-09 36.4 0.1 2 39 338 375 337 378 0.94 4 5 8.9e-19 1.9e-15 57.0 0.0 2 45 393 437 392 437 0.97 5 5 1.4e-19 3e-16 59.6 0.1 1 42 444 486 444 487 0.97
Sequence Information
- Coding Sequence
- ATGGTTCGGAAAAGCATAGATTCCGTGGAGTCATTATTGAAAACGGCTGATCAGCTAAAGATCAAGGGCCTCTGTGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTTTGAGCTCACCGCCACGAGAACCAGGCACTCCCAGGATAAATTTTAGCAAGCTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCAAGGCATTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAAACCGAAGATGAAGATTGTACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAATAATAACAATAACAACAACGGTAACGGTGCAAATAACAATAATAACGGTGACATGTTCTGTCATACAGGACTCGGACACTATGGACATCATCCGGATCCTGGGGAAGTTGACTTACCCCCAGAGACCCAACCCACCCCACCTAGTGCCACGTTGGTCGGCACTACCATCACCCATCTGAGGGATCCTGATCACCATTCCACAGAGATTCAGAACTGTGATAGTGTAAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACGATCGACATCGATAGCCACATGTCGGACCGGGCAAGTGTCAGTTCAAAGAACGCAGCAGACAGCGACAACATGATGATGATCACGCCAGAGCTGCTCGGTTTAATGCCCTCGGGAAGTTCCGTCCACTCGGATTCCGGTGAAAACAACTCGAGGGGCCACTCTGGACAATCGAGCTCGCATCATCACGGATCAAAATCATGGACCCAAGAAGACATGGACGCTGCCTTGGAAGCTTTAAGGAACCATGACATGAGCTTGACGAAAGCCTCCGCAACTTTTGGCATACCATCGACCACGTTATGGCAAAGAGCGCATCGGTTAGGCATAGATACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAAAGTTTGAATAACGCCCTTGAAGCGCTGAGAACCGGCACAATCTCGGCTAACAAGGCATCGAAAGCGTTCGGTATACCTTCCAGCACATTATACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCCTTTAACGCCAGTCCTACCACATGGTCGCCCGCCGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCCGTGCAGAGAGCTTCCACTGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCCACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGATTGGGTCAAATGAGCATTAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGTTGTACGGTCGGTTCAAAAGGGGGAAGTACGAAGAACCGGCAGTCGGTGATCTATCACAAGATGGAAGCAATCCACATTTCCATCAAAGTCCGAATCAAAATCATTCGTCCGCCGTTCCGGATCAAATGCCTTACCAAGGCAGCTGA
- Protein Sequence
- MVRKSIDSVESLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -