Avir023561.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- dl
- Assembly
- GCA_028453745.1
- Location
- CM052096.1:495001-497815[-]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-75 6.9e-71 238.4 0.0 1 169 48 218 48 218 0.99 2 2 0.45 4.5e+03 -1.8 0.2 98 130 510 543 505 574 0.60
Sequence Information
- Coding Sequence
- ATGGAACAATTTCCTGGTATGAGTGATGGGAATATAAATATTAGCGATGTCATCGAGGTCATCCAAACAGATCCTGAGTTCGTGGAGTCCGTTAGAACCGTACCGCAGATAGAGATGAACGCTGGACGGCCGTTGCCATACGTCGAGATAATAGAACAGCCAGCTAGCAAAGCTTTACGTTTTCGCTATGAGTGCGAAGGCAGATCCGCCGGCAGCATACCCGGCGTCAACAGTACACCTGAAACGAAAACGTTTCCTAGTATAAGAATAGGGGGATACAAAGGCAGAGCATTGGTTGTAGTGTCGTGTGTCACAAAAGATCTGCCGCACAGACCTCACCCTCACAATCTCGTCGGGAAGGAAGCATGCAAAAGAGGTGTTTGTACGGTAGAGGTATCGTCGGAAAACATGACGGTTACGTTCGCGAATCTCGGTATTCAGTGCGTTAAGAAAAAGGATATAGAAGAGGCGCTTAGAATAAGAGAAGAGATTCGCGTAGATCCTTTTCGAACTGGTTTCGAACACAAAAGACAGCCTACCAGCATCGATCTGAACGCGGTGAGATTATGTTTCCAAGTTTTCCTAGAAGGATCCCAGAAAGGAAAATTCAATGTCGCGTTACCGGCGGTTGTGTCCGATCCTATATTCGATAAGAAGGCAATGTCGGATCTTGTAATATCCAAGCTCAGTCATTGTAGTGCTTCGGTAGCAGGTGGTATGGAAATGATTTTACTATGCGAGAAGGTTGCGAAAGAAGACATACAAGTCAGATTTTTCGAAGAGAAGGACGGACAAATGGTGTGGGAAGGATTTGGTGATTTTCAGCCTACTCATGTACATAAACAAACGGCGATAGCGTTCAGAACACCGACTTATCGTATACAACAAGTGGACCAGCCCGTGCAAGTATACATTCAGCTGAAGAGACCATCGGATGGAGCAACTAGCGAACCGTTACCGTTTCAGATGTTACCGCTTGGTGCAGGTAGGCCTGCATTCTGGTCTTTGCGGAAAGCATTTGCCCGAAAGAAAACAGACTATAGTACATTTGGTAAAATATTAGCCACCGAATCTGCCTTACTCTCGAACGTTGCGCCCAGATATCCGCGCAATCTCGACGACTTTAACAATAACGACTTTGATATTAAGAAATCGACTAACAAAATCTCTGCCTTACGCGCTTTAAACGATCTGTACAACGTAAAGAATACATTAGACTCTTGTAACGGAAGTACCGAGGTCAATCGTAATATAGCAGAAAATGTGAACCCCTTGAAAACTACTGTAATAGATTATCAAAATAACGAGATACCGAACAACTCTGAAAACGAGCACACGAATAAGATCTACAAACCCGATAGCAGTCGTATGGACAAAGAGACGGTCGATACCAATTCAGGAACATTAACTTACGCCAAACCCGACGCTATTCTCGACAACGCGGATTTATTAAAGAGCTTGGAATCCCCGAAAGATAAATCCGACTGGTTCGACTACTCGGAAGTAGGAAAGTGGGTACAGAAAGGCCAGACGTGTCTGAAGGCGAAGGACCAGGAGGTGGAATTCAAGACCGAGACAGAGAATAGCAACAAATCGTTCAACGAGCTATTGACCCAAGTGGCCGAACTCGATCAGATTTATGCAGATACGCACGCTAAACTAGTGCAAGCAGCCCTCGAGCAAAACAACACCGACCAAACGATGGAGGTGGACATTTGCGACAATCAAACGTACACTAGTCTGCAGATGGCCATGAAGAATCCCATAGAATTCGTGGGTCTTCTGAACGATAGAAAGTACGAGGACGTGGCCGTACCAAAAGTAGATCTGAATCATTCTTCTCCCTCTCCTCCGATGACTACAAAGAGGGATGGAGCGCGCGAAACCGAGGAGAGACTGCCACCTTTACCTCCGAAACGCATCCGAAAAATGCCTTCTATGCCTCTCCTGCCTCGACCTATATCCTCTCACGCTACGGCCGAATCTTTCGTCGAAGCACCCAACAAAAATTTGCCTTCTTTACCTGGAACGCTTACCAAGTCTTCGAAACAAGGGCTCTTTTCGAAATTATTCGCCAAGAAAATCAAGAAAGACAAAGACACTGCCTCCAACACCTCCTCCAAGGGCAGCAATCCCTCTCTAAGCGCTTCGGGAAGCATTGCGTATTTACCGAAACACAGCGTACCAGATGCTTCGCAGTTGCAATGTCCAAGACCGAGCGCGATAAGCACCACCAGCGTGAAATCGCTCAGACTGGACGGCGATGAAACACCGCCGTACGGAATGGAATTGACGGAAGCTGAACACTATGCTTTGTACACGGCTATGGCTCCGCATGCGACTGCGTCTGAATTCGATGAAATGTCTTTTTACTACAGTCCTGTGGAGGGAGGAAAGATCTactcggagaagaaagatacataa
- Protein Sequence
- MEQFPGMSDGNINISDVIEVIQTDPEFVESVRTVPQIEMNAGRPLPYVEIIEQPASKALRFRYECEGRSAGSIPGVNSTPETKTFPSIRIGGYKGRALVVVSCVTKDLPHRPHPHNLVGKEACKRGVCTVEVSSENMTVTFANLGIQCVKKKDIEEALRIREEIRVDPFRTGFEHKRQPTSIDLNAVRLCFQVFLEGSQKGKFNVALPAVVSDPIFDKKAMSDLVISKLSHCSASVAGGMEMILLCEKVAKEDIQVRFFEEKDGQMVWEGFGDFQPTHVHKQTAIAFRTPTYRIQQVDQPVQVYIQLKRPSDGATSEPLPFQMLPLGAGRPAFWSLRKAFARKKTDYSTFGKILATESALLSNVAPRYPRNLDDFNNNDFDIKKSTNKISALRALNDLYNVKNTLDSCNGSTEVNRNIAENVNPLKTTVIDYQNNEIPNNSENEHTNKIYKPDSSRMDKETVDTNSGTLTYAKPDAILDNADLLKSLESPKDKSDWFDYSEVGKWVQKGQTCLKAKDQEVEFKTETENSNKSFNELLTQVAELDQIYADTHAKLVQAALEQNNTDQTMEVDICDNQTYTSLQMAMKNPIEFVGLLNDRKYEDVAVPKVDLNHSSPSPPMTTKRDGARETEERLPPLPPKRIRKMPSMPLLPRPISSHATAESFVEAPNKNLPSLPGTLTKSSKQGLFSKLFAKKIKKDKDTASNTSSKGSNPSLSASGSIAYLPKHSVPDASQLQCPRPSAISTTSVKSLRLDGDETPPYGMELTEAEHYALYTAMAPHATASEFDEMSFYYSPVEGGKIYSEKKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684590;
- 90% Identity
- iTF_00862343;
- 80% Identity
- -