Afus002087.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- -
- Assembly
- GCA_951799405.1
- Location
- OX637333.1:11109331-11140001[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-16 1.7e-12 47.2 0.1 6 71 235 298 232 302 0.89 2 3 0.27 1.8e+03 -0.8 0.0 30 57 425 451 415 475 0.74 3 3 1.9 1.2e+04 -3.5 0.0 48 60 501 513 499 520 0.78
Sequence Information
- Coding Sequence
- ATGGCAGACGAGCCGCTGAGTTTTAGTGACGTGCAATTTTTAAACGGCGAAGCGCCCGAGGAAACCGAGTCGCCGAAAATTGAAGAGAAATCTGTCCTTGTAGCGGTAGAAGAAAATGGTGATGCCAAAGACGATACGAAGTCTGTTGAGATTCATGAAATGAAAACAGTCGTAAACGATGGATCTACAAAGGAACCTGAAACAGAGAAACCTGATGATAAAAAACCTGAAGAAATAATAAAGAAAGAAGATGAAGAAGTTAAACGAGAAGATTCCGAGATGGCGGAGGTCCCAGCCTCCAATGACAGGAAGCGCAAGGCCAGCGAGTCCTCTCAGGACTCGGACTTTGCTGGTTTCGAGCCTCCCGCGGAACTTCAGGACATCAAGATCAAAAATCTCTCAAAACTGATAAataaaataaGCAAGGAAACAAAAGAATCTGATGTGGGTTGGTCCAAGTTTTCAGCCATTCTCAAAAGAAACGCACTTGACTCTCCTGCTCATTCCACAGATGAACCGTCTCGTCCGTCCTCAGGTTTATCCTTCAGATCGGAGAGTGAACTGATGGCTGTCAACTACTCGTCTACGGAGTTGGGCAGTTCGGCAGCCAATAGTCCCGTCCCCGTGGGCACGCCGGCCGGAAATCGCGGCGGCCGTGCCTCCCTGGGAGGGCGCACCTCCAGCCTGGACCTCAGCAGCCCGCAGTACCGCGCGCCCATGGAGCGCGGCTGGAAGAGGGAGCTGGTGTACCGCGCCTCTCTAGACAAGCAGGGCCGCCGCCAGGGCGACATCTACTACTACTCACCCAAGGGGAAGAAGCTCAGGTCCACAAGAGAGGTGTCGGAACATTTGTCAGATAACGACCTCACCATTGAGAACTTCACATTCTTCAAAGGACCTCTGGGGCTGGATGATCCTGACAAAGAAATTATCAGGAATGCCAAGATAGTAGCCTCCTCCACCATGGTGAGTGCCGCGCCTGCTCCGGCTGTCCCCGCAGCCCCTCCAGCTGTCCTGGGGAAGAGGACCCCCAAGCCCAAGGGACCCAAAGGGGCCTCACCCGAGAGGGGAGTGTCAGCCACTCCTAAGATCAGACCAATCAAGAACATCAAGCTGAAAGCCCGAGTCAGTCCAGCCAAGTCTTCAAGCCCGTCTCCGCTGTCCGAGGAGGCTCCACCTGTCCTCACCTCAGCTCCGCCTGCTGAAGGAGCTGCTAAACCCACACGCAAGTCCCTGGGCCTGGTGGGCAAGAAGAAGCGTGTTGGGGAGCAGCGACCACAAGTTGTGATGTACACGCCCATGGGACAGAGGCAGCCGGACTCGGAAGTCAACAAGTACTTTGATCAGGCTGTTAAGACTTTTGGCACCGACACTACAACCAAGatGACACGTGAGCTATGCTCAGTCCATTGCCCCAATGCCAAAGGTGAAGTCCCGACCATGCAGTGCAGTCTGTGCAGATGCTTGTATCACGAGACATGTGCGGGCATGCGACAGGCGGATCTCGTGAGATACATCTGTAAGAACTGTCAGACATCCAGTCCTGTGAAGCTAATGCCTCCCCAACTGACGCAGGCACCGACGATAAAGCCTCAGATTCGCGGTCCCCCTCGGCCCCCTCCACAACTGACACCGCAGCCGCGGCAAGCCTTCAAACTCCTGCCACAACCACGACTCATTCCTGTCGTCAGGCGAGCACCACCGCCAAACAAGCTCACCACAATCAGGAAACTAAACTCTGAAGACATCATCAATATCAACAAAGCCAACAGCGATCCAAACAAACCTAACTTTAATATGAAGAGCGTCATAGGATCTGTTACTACATGGCTACCACCGAGCTCAACTATCAGAATGGGAGGACCGAAATCTGCAAAAAATCCTGCCAATATGCAGATTTTAAACAATATGATGAATCCACCTCAGACCATTGCAATTCTAAACGGAAGACGGTATATTATAGTTCCTAAACACAGCGTGATGAATGTGACATCATCAAATGCAGGGGGGGCTGCTGCACTCAAACAGACGGAGAACGCTCCAAAGATTGACAGTGCTGGGGATGGGGGGGAAAAAAGCGAAGAGGCTAAATCAAATGATGAAGTGAAGGTGAAAGATGAAAGTGTTGATGGAGATATGGATGTGGATGAAGGAGAATCGATTGAGGCGGAGGAGAAAGATCTGGGAGAAACTGAACAAATGGAAGATGATACTAAGAAGAGAAAATTGTCTGAGATTGAAGAATCTCCATCTGCGACTCCCAAAAAGAAGTTGAAATCTTCAGACACACCCAAGACAACAATGACTGCTGAAAACGGGAACGATGGCaagtttttataa
- Protein Sequence
- MADEPLSFSDVQFLNGEAPEETESPKIEEKSVLVAVEENGDAKDDTKSVEIHEMKTVVNDGSTKEPETEKPDDKKPEEIIKKEDEEVKREDSEMAEVPASNDRKRKASESSQDSDFAGFEPPAELQDIKIKNLSKLINKISKETKESDVGWSKFSAILKRNALDSPAHSTDEPSRPSSGLSFRSESELMAVNYSSTELGSSAANSPVPVGTPAGNRGGRASLGGRTSSLDLSSPQYRAPMERGWKRELVYRASLDKQGRRQGDIYYYSPKGKKLRSTREVSEHLSDNDLTIENFTFFKGPLGLDDPDKEIIRNAKIVASSTMVSAAPAPAVPAAPPAVLGKRTPKPKGPKGASPERGVSATPKIRPIKNIKLKARVSPAKSSSPSPLSEEAPPVLTSAPPAEGAAKPTRKSLGLVGKKKRVGEQRPQVVMYTPMGQRQPDSEVNKYFDQAVKTFGTDTTTKMTRELCSVHCPNAKGEVPTMQCSLCRCLYHETCAGMRQADLVRYICKNCQTSSPVKLMPPQLTQAPTIKPQIRGPPRPPPQLTPQPRQAFKLLPQPRLIPVVRRAPPPNKLTTIRKLNSEDIININKANSDPNKPNFNMKSVIGSVTTWLPPSSTIRMGGPKSAKNPANMQILNNMMNPPQTIAILNGRRYIIVPKHSVMNVTSSNAGGAAALKQTENAPKIDSAGDGGEKSEEAKSNDEVKVKDESVDGDMDVDEGESIEAEEKDLGETEQMEDDTKKRKLSEIEESPSATPKKKLKSSDTPKTTMTAENGNDGKFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -