Afus017372.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- ubtf-b
- Assembly
- GCA_951799405.1
- Location
- OX637353.1:6011876-6013900[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.61 2.8e+02 2.5 0.3 28 57 44 73 31 76 0.89 2 7 1.4e-18 6.2e-16 59.1 0.6 1 68 127 194 127 195 0.98 3 7 0.051 23 6.0 0.7 34 64 243 273 234 276 0.70 4 7 0.0044 2 9.4 0.1 26 68 315 357 293 358 0.89 5 7 4.2 1.9e+03 -0.1 0.9 43 66 379 402 377 404 0.82 6 7 1.9 8.7e+02 0.9 0.4 13 37 457 481 456 502 0.89 7 7 9.2e-06 0.0042 18.0 4.3 35 68 616 649 609 650 0.91
Sequence Information
- Coding Sequence
- atggcaGCTAAGAAGAAACAAGCCATTCCAAAAACAACTCTGACTGTCGATGAACAGCCCGCAGAACATGTAAAATCACCTTTTTCTGCTGAAGAACATCCTGCGGAAGATCTAGAAATATCATGGCCTGCGGAggatgtgaaaaaaatggttctccgTATGCAAGAACATCTACCCAAGGATGACAAGTTGAAGTACAGGACACGCGTGGAGAAACTCGACTGGGAGAGTATAGCCTTTGAGCCGTACACTACGGCAGAATGCAAGGCCACCTGGTTGCTGTTTCAGCAGAAGTTGAGATGCTACCGTCTACTCGGAGAGATCCTTCAAGAGGCCTTGGAGTGGGCTCCCAAGATACAAAAGAAACATCCGGAACATCCCAAGAAACCCCTTGGAGTGTTTTTCATGTACTCGCAGGACAACAGAAAGagcttgttgaaaaaaaatccccacTTATCAGTGAtagacatttctaaaattctaaGCGAGAGGTACAAGCACCTTTCTGCCCAGGAGAGAGCTGCCTACGAGAAGAGATTTGCCCTACAGAAGGACGCCTACCATGCCCAGATGAAGACTTTCTTGGACCAGCACCCGGAGGCAGCTGTGAAGAAGGATCACATCATGAAGAAGAAGGGCCAGATGACTGCGGATAAGCTGTTCATTATAGAGAAGCTTAAGGACAACGTCGGCAGCGAGGAGGTCCCCATGGAGGAGATGCTGCCCCAGCTGAAGAGGCAGTGGGAGGAGATGCCGGAGGAGGAACGCCTCACGTGGATGAAGAGGAATGAGGATTACAACAAGGTGGTAAGGAAGGACAGGCCAGTGTCATCGAAGGAGCAGAGGAAGAGGGACGCCATGCAGGGCCGGCCCACCAGGCCCCCGGCCAGCATCTACAACTACTACACGCAGAAGCTGCTGTCTGGCGGCCAGCTCAGCAACATCCCCAGCAAGGATCGCATGAAGGAGATTTCCCTAAGATATAACGCTTTAGGGGAATCTGAGCGCAAAACCATAAAGGAGGAATTCAACAAAATATGCAACAAGTACCAGGCAGAGTTCCAGGAGTACCTGCTGCACCTGAGCCCGGAGATGCGGGCACTGGAGGAGGCGCAGGTCATCAAAACCGGCACAAGTAAAAGAtccagaaaaaaaacacataaagaaAGTGAAACAGAGAAAGAGCAGCACGCAAAATCAGTTGATGAAATTACATCTAACGAGAAACACTTAACGATGGGAGACGACGGAGGCATGGATTTTCCTGCGGAGAAATCAAATCACATTCAAGCCACTCATAAACGGTTGAAAAAGAAAAGTCTGTCACTTGTTATAGAGGAAGATGCAGAAGGTCAAATGCCAGTAACAGAAGAGAACAGGGAGGAGATTGTAGAAAAGTCACCGAAAAAGAGGAATATTCAAATGCAAAAGGATGCGGAAGAATCAAGTGTCGTCGAGCTAAGACCAAAGCGGAAGACAAGGCGAGCGCAAGGTGCTGAAGAGCAGGAAGAAAACAAATTGGATGGGAATGTTGAAGAAAGCAGATTGAATGCCGTGGAGGAATTACCTAGTACGACAAGGAAGGGGAGGTCAAGGAAGGACACAACCAAACTGCAGGAGGCTCCTCCTCACCAAGTTGCCACCAGCAGTGAAAGTTTGcctaaaaggaaaaagaagaacaaagcgGCAGAAGTAGCCAACAACTCTACCGTAGATTTGAATGAATCATCGTACGTGGATGGAGACATTACAAGGGCTTTGTTTGACGAAGAACCTGAGCCTCCGCCAAGAGACATTTTCCCATTCTTCGTTGTGTGCATGCAGAAGGAAGGCCTGGAGGGAGACGCGAGCGCCGTGTGGAAGTCCAtgtcaaagaagaagaagaagcagtaCGAGGAAGCTCTGCAGGAGGCCAAGGAGGACTACAAAGTCAGATACGAACAGTTCCTCAACTCCATGTCCAGCAAGCAACTCAAGAAGTTCTTGAAATACCAAGATAAGAAAGCTCCGGAAACAGATGACTAA
- Protein Sequence
- MAAKKKQAIPKTTLTVDEQPAEHVKSPFSAEEHPAEDLEISWPAEDVKKMVLRMQEHLPKDDKLKYRTRVEKLDWESIAFEPYTTAECKATWLLFQQKLRCYRLLGEILQEALEWAPKIQKKHPEHPKKPLGVFFMYSQDNRKSLLKKNPHLSVIDISKILSERYKHLSAQERAAYEKRFALQKDAYHAQMKTFLDQHPEAAVKKDHIMKKKGQMTADKLFIIEKLKDNVGSEEVPMEEMLPQLKRQWEEMPEEERLTWMKRNEDYNKVVRKDRPVSSKEQRKRDAMQGRPTRPPASIYNYYTQKLLSGGQLSNIPSKDRMKEISLRYNALGESERKTIKEEFNKICNKYQAEFQEYLLHLSPEMRALEEAQVIKTGTSKRSRKKTHKESETEKEQHAKSVDEITSNEKHLTMGDDGGMDFPAEKSNHIQATHKRLKKKSLSLVIEEDAEGQMPVTEENREEIVEKSPKKRNIQMQKDAEESSVVELRPKRKTRRAQGAEEQEENKLDGNVEESRLNAVEELPSTTRKGRSRKDTTKLQEAPPHQVATSSESLPKRKKKNKAAEVANNSTVDLNESSYVDGDITRALFDEEPEPPPRDIFPFFVVCMQKEGLEGDASAVWKSMSKKKKKQYEEALQEAKEDYKVRYEQFLNSMSSKQLKKFLKYQDKKAPETDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00023735;
- 90% Identity
- iTF_00023749;
- 80% Identity
- iTF_00023736;