Afus020297.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- DIS3L2
- Assembly
- GCA_951799405.1
- Location
- OX637357.1:12138009-12153509[+]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.43 5.5e+03 -2.0 0.7 9 31 117 139 111 155 0.72 2 5 0.0016 21 5.8 0.2 14 48 324 358 315 360 0.81 3 5 0.00077 9.9 6.8 0.5 19 47 563 592 554 608 0.84 4 5 0.00027 3.5 8.3 0.1 11 49 844 884 841 885 0.81 5 5 0.0002 2.6 8.7 0.0 42 71 958 987 943 988 0.84
Sequence Information
- Coding Sequence
- ATGTGTGATAAACTATCCAACGAATCAGAATGTCGCTCCATGGTGTCTGATGAAAAATCTGGTATTCAAAAACCTATAGATGATGATGACAAGGAGTACACCAATAATAAAGCTGTTACAGATTTATTGCATAATGGAGAAATGGGTTTAGAAGTCCAAACTGCTCCAATTAATACTGTTTCCGTCAAACATAGAAAAAAAGCAAGGGTTTCTTGGGCAGACGTAGTTATTACATCATCTGATGAGGATGATGCCATTTTGCGATGTCACAAAATGGTGGAGCATTCAATTGCTTCTACGAAGATCTCCCTGAAAGCTAAAGCATCAATGCAGACAAAAAGCTTCAAAAAACACAACGATGTATATGTAGctaaaaaaaatgagaagaGATTAAAACGAGAGAAGAATTTGCAGATCAAGAaagaaaaacttgaaaaaaagaaaattaacaaaaaaattaagaaagagTCAAGAAACGAAAAGCATTCCTCTGAGAATTGTGTGGAGAAAGAAGTCAGTGAGATAAATCAGCATAATCATGACATAATGACTCTACagaatttatatttccaaaaaataAACACTTCTCCACCCCCTCCCACTGAAGAGATTTCATCTCCATCCCTTGATGCAGAAGATACAAACTCTAACTCTGATGATGGCAAATGTAATGTAAAACAAAATGGTGATGGTAAACCAAATCATACACGTGTTGTGCCTCAACTTAAAATCCCTACAACAGATATAGCTGTATCTCAGACTTTGCCGATAGCTGTTAGGAAGAAAAGACCCCCAAAAGTGCACATAATTCCTGTAGTTGAAAAGGTCAAGCGGTTTGACAAGTACATGACACATACCAAAGTTGTCAAAGGACTACAAGCAAACACCTTAATTGAGGGTTGCTTAAAAATTGACTCAACCAACGGGAAGCATGCTTCTGTTTTGACGAAAGATAATCACAAGATAAAAATTGTTGGGATCAAGAATAGAAATCGAGCTTTTGATGATGATATTGTGATTGTAAAACGAGAGACGGCTATGGACGGGAACTCACCAACTGGCAGAGTTGTTTACATCAAGCAGAGAAATCACCCGCGAGAATGGGCGGGAAGAATTGAACAAGTTTGTGCGCCAATCTGGAGACAAGTCAAGTATGTGAACCTTCTGCCGAAAACTAAATGCTTGCCTATCCTGCAAATCTCCCTGAATGATTTGCCTCACAAATTCCTTGATGATTTTAAGATGTACAGGAAGTACATATTTGTTGCAAAGCTGGTAGATTGGTATAGCATGGCGTTTGCTGTCGGAAAGCTTGTCAAATGGATAAGTCCTGAAGGAATGATTTCCTTTCCTTCTCTTCCTCCTTCAGATCATGAGTTGCTCCAGCTCACTGATGAAACTATTAAAAATCGTAATTCTGCCATTGAGCTGGAGCACAGAAAAGAAGATGCCATAAAAACCAGCAGTcaagttttaatcaaaaataaaaaatctaaagcAACTCCTACAGAAGTGAAAAGAAACTTTAAGTTTGAGAAGTATTTGTCTTACAGTGAAGTTATGAATGGCTTGAGAAGGAATGATTTGATTGAGGGTAGGCTGGAAATAAACCCAGATAGTTCCAAACTTGCATGTGTAACTAGTGTGGAAGATTCTGCCGTTGTGATTCACATAACTGAAGTTATTGACAGGAATAGAGCTTTAGATGGAGATGTAGTTGTTGTCAAAGTTACAAAGAAGGCCAGGCCAGGCGCCGCAAGTGTGGGGAAAGTGGTTTTCATTAAGGAAAGAAATCACCCGCGTAAATGTATTGGAAAAATAGTTAGCAAGAATGAGTCACTTTGGGAACAATGCCAATATGTGACTTTGGTTCCCCTTGACAAGAAACTGCCCAACATACAAATACCAATAAGTGACTGTCCTTCGTCGCTTACAAAACAATTTGAACAGTTTACAAAGTGCTTGTTTTTGGTTGGAATAAAAGATTGGTACTATGCAACGTTTGCAGTTGGGACTTTCCTTCAATGTCTTGGCCTTGAAAAGAACTTAAGTCCCTTGGTGTTGCGGGAAATTGAAGCTAAAATGTACCCAATTCCTGGTCCTGCAATCCTGAAGGAAAACCCTCATGTTCCGCCAAATAGTGAATTCAATGTGAATCATTCCACTGAAATCAAAGCATCTCAAGCCAGTGAAAATGTGCTGGAAAATGCAAATCAATACAATCATGTTACAGGAGGGAACTCTGTAAATAATTCAACCCAAGAGGATGAAGAAGAGCTTGAAATGGAAAATGTTCATACCTCAGAATGCAATAATATGAAGGAGCAGCTCAGCATTCGTTCTTTAGTGTCTGCTGAGGATTACAGAGAGTTGCTTGCATTTCTAAAtaggaaaaaacaaatttacgAGAAGTACAAGTCTATAGAAGAGGTGAAGGAGGGATTAGCTAAGAAATCTATGTGGCAGGGAAACCTGAGGATCAATTCGCATAATGTCAAATTATCTTACATCACCACGGGTGATGGGAATGAGGACATTGTCATAAAGAGTGTCTATTCTAGGAACCGAGCATTAGAAAATGACTTGGTTGTTGTGAAAGTGAGTAGCAGTTCCATTTCTAAAGACAGAATGTCAGGGAAAGTGGTGCACATCAAGAAAAGAAACCATTCTTTGACctgcattggaaaagtgaatctcACCTCTGGGAAGTTCACGCACTTGGGATTTGTAAGCTTCATTCCTAGAGATGAACGGATGCCAATCATGCAAATTCCAGTGAGCGAACTTCCTAAAATGTGCGGCACAAGCGCACCAGACATTGAAGATTGTTTATATTTAGCTAAAATAGTAGACTTCTGCAGCTTATCCTTCACCCTGGGAACTATCATTAAATGTTTGGGCTCCCAAAGTGATATGAGCATCCAAGCCACAGCAATCCTGCTAGAGCATGACCTGAACACAGATCCTCATGGAAGTGATCTCACTGCAAAGCATCTCCCAGATATCAGTAAAGGGATCTCGAACAAGGAAATGAGTGCTCGAGTGGACTACCGCAAGTGTTGTGTTTTTACAATCGATCCCCTGACTGCCAGGGACTTAGATGACGCCATGTCCTGTGAGGTTTTAAAGAATGGAAATTATCGTATTGGTGTTCACATATCCGACGTCGCCCATTACTTGAAAGAAGGCACCGAACTTGATGACGCTGTTTTGGAAAAGGCGACAAGTGTTTATTTAGTTGACGAGACCCATCACATGCTGCCCAGAGAGCTGTGCGTGCATTGCTCCCTTCTCCCAGGAAGAGACAAAttaacattttctattgtttgggaaataacaaaatatggaGAAGTTCTTAAACATTCTTTTACTAAAAGTGTCATAAACTCATGTTGTCAATTGACCTATGAACAAGTtcaaaaaattattgaaaaccCACACAAGCGTCTCAATGCTGTAGACTTTCCCGATATCTTACATTCATGGAAGTTGAAAGATATCTTTGACCGTGTCAGAATTTTGTACAGCCTCTCAACATTCTTTAAAAACAGAAGGTTTGACGCAGGGGCGTTGCGTATTGACCAGCCCAAACTATCGTTTAAGCTACACCCAGAAACTGGCTTACCGCTATCCTACGCCATCGAAGAACACAACGAGAGTCACAGCCTTATAGAAGAGTTCATGCTGCTCGCCAACTCCACTGTGGCTGCCCGCATTTACAAATCCTACCCTCATCTTGCATTGTTGAGACACCACCCCCCACCTAAAAGTTCAATCAACACAGTGGTGGAATGGTTTGAGAGATTTGGTCTCAGCATTAACCACGCCTCAGCTGGCGATCTGATGGGCACGCTGTTGAAGTTTGAAGAGGACGAGGCCTTTTCTGCAGTACTGAGATGTCATCTCATCAAGACAATGTCCCGAGCCCTCTACTTCTGTGCTGATGGGAAAGATCCGCAAGCCGGCCACCACTATTCCCTGAATATTCCTCTGTATACTCACTTCACGAGCCCGATAAGGAGATATGCTGATGTCATGGTCCACAGATTGTTGGCGTCGAGCCTGGAGTACTCCCCTCTGCCCGCCTGGTCCTCACAGCACGTGCAAGCTGTCGCCGCACACTGCAACGAACAAAAGTTCAAGGCCAAGAGGGCCAGTGATTTGTCCGCAGAGCTTTACCTGTGGAAGTACATCTCTATGAATTCACCGTTGGTAGAAATGGCTGTGGTCACTTTCATTAACAAAGAATCGCTGGAGGTGTTCTTGATGTCCACGGGACAAACGGCTCTTATCCGGTTTCAAGAATTTTCCGACAGCAGGGTGACGTTGAAACTTCCCACAGTTCTGAAGCAGGGAGAGTTCCCGTACGTGCAGGCCAAGTGGAAGAAGATGGGGAAGTCGGTGCCCAAGTATGTGGATAACATAGAGATATTCAGGATCCTGCACGTTGAACTGACGGCGAACCAGAAGGAAATGCGCACCAGCATCAAGGTCCTACGACCAATACCCAGCACATAA
- Protein Sequence
- MCDKLSNESECRSMVSDEKSGIQKPIDDDDKEYTNNKAVTDLLHNGEMGLEVQTAPINTVSVKHRKKARVSWADVVITSSDEDDAILRCHKMVEHSIASTKISLKAKASMQTKSFKKHNDVYVAKKNEKRLKREKNLQIKKEKLEKKKINKKIKKESRNEKHSSENCVEKEVSEINQHNHDIMTLQNLYFQKINTSPPPPTEEISSPSLDAEDTNSNSDDGKCNVKQNGDGKPNHTRVVPQLKIPTTDIAVSQTLPIAVRKKRPPKVHIIPVVEKVKRFDKYMTHTKVVKGLQANTLIEGCLKIDSTNGKHASVLTKDNHKIKIVGIKNRNRAFDDDIVIVKRETAMDGNSPTGRVVYIKQRNHPREWAGRIEQVCAPIWRQVKYVNLLPKTKCLPILQISLNDLPHKFLDDFKMYRKYIFVAKLVDWYSMAFAVGKLVKWISPEGMISFPSLPPSDHELLQLTDETIKNRNSAIELEHRKEDAIKTSSQVLIKNKKSKATPTEVKRNFKFEKYLSYSEVMNGLRRNDLIEGRLEINPDSSKLACVTSVEDSAVVIHITEVIDRNRALDGDVVVVKVTKKARPGAASVGKVVFIKERNHPRKCIGKIVSKNESLWEQCQYVTLVPLDKKLPNIQIPISDCPSSLTKQFEQFTKCLFLVGIKDWYYATFAVGTFLQCLGLEKNLSPLVLREIEAKMYPIPGPAILKENPHVPPNSEFNVNHSTEIKASQASENVLENANQYNHVTGGNSVNNSTQEDEEELEMENVHTSECNNMKEQLSIRSLVSAEDYRELLAFLNRKKQIYEKYKSIEEVKEGLAKKSMWQGNLRINSHNVKLSYITTGDGNEDIVIKSVYSRNRALENDLVVVKVSSSSISKDRMSGKVVHIKKRNHSLTCIGKVNLTSGKFTHLGFVSFIPRDERMPIMQIPVSELPKMCGTSAPDIEDCLYLAKIVDFCSLSFTLGTIIKCLGSQSDMSIQATAILLEHDLNTDPHGSDLTAKHLPDISKGISNKEMSARVDYRKCCVFTIDPLTARDLDDAMSCEVLKNGNYRIGVHISDVAHYLKEGTELDDAVLEKATSVYLVDETHHMLPRELCVHCSLLPGRDKLTFSIVWEITKYGEVLKHSFTKSVINSCCQLTYEQVQKIIENPHKRLNAVDFPDILHSWKLKDIFDRVRILYSLSTFFKNRRFDAGALRIDQPKLSFKLHPETGLPLSYAIEEHNESHSLIEEFMLLANSTVAARIYKSYPHLALLRHHPPPKSSINTVVEWFERFGLSINHASAGDLMGTLLKFEEDEAFSAVLRCHLIKTMSRALYFCADGKDPQAGHHYSLNIPLYTHFTSPIRRYADVMVHRLLASSLEYSPLPAWSSQHVQAVAAHCNEQKFKAKRASDLSAELYLWKYISMNSPLVEMAVVTFINKESLEVFLMSTGQTALIRFQEFSDSRVTLKLPTVLKQGEFPYVQAKWKKMGKSVPKYVDNIEIFRILHVELTANQKEMRTSIKVLRPIPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -