Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.3e-15 1.5e-11 45.2 0.0 1 65 11 77 11 81 0.89

2 5 0.0012 5.8 7.5 0.0 35 58 79 102 76 109 0.90

3 5 0.21 9.6e+02 0.3 0.0 38 55 102 119 101 124 0.89

4 5 3.8e-05 0.18 12.4 0.0 34 65 121 152 115 155 0.91

5 5 1.1e-11 5.2e-08 33.7 0.0 35 122 154 245 151 250 0.86

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.3e-15	1.5e-11	45.2	1	65	11	77	11	81	0.89
2	5	0.0012	5.8	7.5	35	58	79	102	76	109	0.90
3	5	0.21	9.6e+02	0.3	38	55	102	119	101	124	0.89
4	5	3.8e-05	0.18	12.4	34	65	121	152	115	155	0.91
5	5	1.1e-11	5.2e-08	33.7	35	122	154	245	151	250	0.86

Coding Sequence: ATGGGCgagcggccggcgccggcgccggcggtgGTGATCGCGGAGCAGCCCGCGAGCCGGCACAGATTCCGCTACAAAAGCGAGCTGGGCCCCAGGCGCTACGTGGACGTCATACTGGGCGCGCACAGCTCGCCCGGCGCCCGCAGCTACCCCGCCATCGAGGTGCCGGGCTACGAGGGCCCGCTGGCCGTCATGGTGTCCCTCGTCAACGCCCGCGACAAGCACTCTCCCGGCGCCCGCAGCTACCCCGCCGTCGAGGTGCCGGGCTACGAGGGCCCGCTGGCCGTCATGGTGTCCCTCGTCTACCCCGCCGTCGAGGTGCCGGGCTACGAGGGCCCGTTGGCCGTCATGGTCTCGCCCGGCGCCCGCAGCTACCCCGCCGTCGAGGTGCCGGGCTACGAGGGCCCGCTGGCCGTCATGGTGTCCCTCGTCAACGCCCGAGACAAGCACTCGCCCGGCGCCCGCAGCTACTCCGCCGTCGAGGTGCCGGGCTACGAGGGCCCGCTGGCCGTCATGGTGTCCCTCGTCAACGCCCGCGACACTCAAGTGCACCCGCACGGGCTGGCGAGCGCGGACGCACGCtacgcgggcgcgggcggcgttCTGCTGATGGCGGCGCGCGGGCCGCGGGTCGCGCTCCCCAACGTCGGCGTCGTCTGCGTGCGCAGGAAGAACGCCGCCGACATCGCCGACGCTTTTCGTCAACGCAGAAACGTAAAAGTGGATCCATTTCGAGGTGAGACCCTATATTTGAACTGA
Protein Sequence: MGERPAPAPAVVIAEQPASRHRFRYKSELGPRRYVDVILGAHSSPGARSYPAIEVPGYEGPLAVMVSLVNARDKHSPGARSYPAVEVPGYEGPLAVMVSLVYPAVEVPGYEGPLAVMVSPGARSYPAVEVPGYEGPLAVMVSLVNARDKHSPGARSYSAVEVPGYEGPLAVMVSLVNARDTQVHPHGLASADARYAGAGGVLLMAARGPRVALPNVGVVCVRRKNAADIADAFRQRRNVKVDPFRGETLYLN

Sequence clustering based on sequence similarity using MMseqs2