Ahon007645.1
Basic Information
- Insect
- Adoxophyes honmai
- Gene Symbol
- -
- Assembly
- GCA_005406045.1
- Location
- BHDV01000412.1:79595-87499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.019 1.1 10.1 0.1 5 23 360 378 359 378 0.97 2 12 0.02 1.1 10.0 0.2 1 23 384 406 384 406 0.91 3 12 0.53 30 5.5 0.3 3 23 415 435 413 435 0.87 4 12 1.2e-06 6.6e-05 23.3 0.7 2 23 441 462 441 462 0.98 5 12 0.003 0.17 12.6 4.3 1 23 468 490 468 490 0.98 6 12 0.0032 0.18 12.5 0.1 1 20 494 513 494 515 0.94 7 12 0.00013 0.0071 16.9 0.1 1 23 548 571 548 571 0.96 8 12 0.0014 0.08 13.6 0.9 3 23 580 600 579 600 0.99 9 12 3.3e-05 0.0019 18.7 0.2 1 23 611 633 611 633 0.98 10 12 0.00013 0.0073 16.9 6.7 1 23 639 661 639 661 0.98 11 12 0.003 0.17 12.6 0.3 3 23 669 689 667 689 0.98 12 12 3.3e-05 0.0019 18.8 0.9 1 23 695 718 695 718 0.96
Sequence Information
- Coding Sequence
- ATGGATACGTGGTCGAGTTTGTGTCGGTGTTGTTTGTCTCCCGAATCTGAAGTGTCACTCTTCGATAACGAGAAGAACGTGAAGGagaaattttatgaaataacCACAATCGAGGTAAATACTGATGATGGGCTGCCTCAGAAACTTTGCGGACAGTGCTATGAAaccatgagctctgcctaccagtTCCGCAACCAGTGCATCAGAATGGACACCGAATTGAAGCTACAGCTGGAAGCCCTGCTCACCCAGGCCCAGGAAGAAAACGAGATCACCGAAGACACCACATCCCAAGACCAAGAGTATGATGCTGATGACATAGCCAACAATCCTGAGAAACAACTAGAAGCCATCATTAAAAAAGAACCAACTGACAGTGATGATGATTACTACTATGTACTAGTTATTGATGACCCAAAAGATAAAGATGAAAATCAGGCTGAAGATAAAAATCTTACTAATGCTGAAATCAAACATGAAATTATGGAAGCTATACCAGAAGAAATTGCTCCagaaaataatgaggagatgaTAAACAATCAGCAGTTTGAACTCAATCATTTTCTCATGTCTGACACTAAAGTGCCCACCAATGTCCCTGCTACTATTCTAGAGAATGAAGAGGAAGGACAGGAAAATGAGGAGGAGAACTATGAAAATGCAATGGAGACTGAAGATCACCAGGACGATAACTCCCAAGGTTATGCAGTGATGGAAGGAGATATAGAGGATTCACAAGATAATGTCACAGATTTGGTAGATGCTATCACGGGAGAAGTTGGAGGAGGATTATCTGGTAAAATCAGTAAGAACagctttatcaaaataataacaacaagTGGAGCTGATGGCACCATTCTACTCAAAGATAATGTAGCTTATCTGACAGAATCCCAATTGGATTCAAATGAGGAGGGAGAACCACTTTCACAAGAAGAAGAGGTCATCTTTTGTGAAGGTGATGACACTTCGCAGTTTCAAATCCTGAAATGTGATGGAAATGAGTTGGTCATAGAATATGCTGATGATGGCCAGATAGCAACAGTGTTGCAACAAGAGGACGGCAGCTTCCTGTGTGACTGTGGTGAGCAATTCGAAGACTTAGCAGATTATGAGAAGCATCAATACACCCACAACCCAATAGAGGAGCATGTTTGCAACTTATGTGGCAAGGGTTTCGAGTCTGCCGAGATTTTGACTGGCCATACCCTGCTGCATAATGTTACTGGTCTCCTCGTGATGTGTCCCTTCTGTAAACAGCTCATCAGGAGAAGTGCTTTAACCCAGCATATAAAATACGGGCACAACAACATCAAACCGCGTTGCAACGTTTGCCTCAAGACCTTCGCAAACCCCAATAATCTGAAGCGCCACATGATGATCCACAGCGGCATAAGACAATTTGAATGCGACATCTGCTTCAAACGGTTCCACCAGAAAATTACCATGCAGACGCACAGACTGACACACATCCACCCGTTTTCCTGCAACGAGTGTGATGATACATTCCCTAACAAAGCTGACTTAGCAGCTCATAAAGAATCAAACGAATGCACCAAATCCAAAGTTCAGAAAGTACGCGATGAGCTCATGAAGACGGCTAAGCATGAGATCACCACCAATCTAGGTAAGCTGTTGGGCTACGCGTGCGCTTTGTGCAAGAAAATGTTCTCTGTAGAATCAGCATTAGAACAACACATAGACACTGTACACTTAGTAGACCCAAATGAGCTGTTGTGTTCCGAATGTGGCGAGGTATTGACGTCTAAAAAAGACATGCACACGCATATTTTGACGCACAGAACTATGAAGTTGAAGAATTCTAAAAGGTTTGAATGTGGTATTTGCGGGAAAAGCTGTGCCAGCCAAGCGATGCTTGTTATGCACGAGAGGGTTCACACCAATGAAAGGCCTTTTCCGTGCCATCTGTGCTCTCTCAGGTTTAAAACCAAGACGCATCTACGTACCCACCAATTGACTCATACAAGAGAGAAGAAGTTTGGTTGCTCCGTTTGCATGAAATTCTTTGCCCTCAAAGGGAACTTAGTGGTCCATCTACGGACGCATACTGGCGAAAGGCCCTACATTTGCACACTGTGTGGGGAAGCGTTCATTGACTCTAAATACCTAAAGAAACACAAGTTAAAGAAGCATTCTATACAAAATGTTCCGTGGAACAAGTACTAA
- Protein Sequence
- MDTWSSLCRCCLSPESEVSLFDNEKNVKEKFYEITTIEVNTDDGLPQKLCGQCYETMSSAYQFRNQCIRMDTELKLQLEALLTQAQEENEITEDTTSQDQEYDADDIANNPEKQLEAIIKKEPTDSDDDYYYVLVIDDPKDKDENQAEDKNLTNAEIKHEIMEAIPEEIAPENNEEMINNQQFELNHFLMSDTKVPTNVPATILENEEEGQENEEENYENAMETEDHQDDNSQGYAVMEGDIEDSQDNVTDLVDAITGEVGGGLSGKISKNSFIKIITTSGADGTILLKDNVAYLTESQLDSNEEGEPLSQEEEVIFCEGDDTSQFQILKCDGNELVIEYADDGQIATVLQQEDGSFLCDCGEQFEDLADYEKHQYTHNPIEEHVCNLCGKGFESAEILTGHTLLHNVTGLLVMCPFCKQLIRRSALTQHIKYGHNNIKPRCNVCLKTFANPNNLKRHMMIHSGIRQFECDICFKRFHQKITMQTHRLTHIHPFSCNECDDTFPNKADLAAHKESNECTKSKVQKVRDELMKTAKHEITTNLGKLLGYACALCKKMFSVESALEQHIDTVHLVDPNELLCSECGEVLTSKKDMHTHILTHRTMKLKNSKRFECGICGKSCASQAMLVMHERVHTNERPFPCHLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYICTLCGEAFIDSKYLKKHKLKKHSIQNVPWNKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009340;
- 90% Identity
- iTF_00462637;
- 80% Identity
- -