Adec006422.1
Basic Information
- Insect
- Adalia decempunctata
- Gene Symbol
- -
- Assembly
- GCA_951802165.1
- Location
- OX637696.1:122052-125361[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.015 2.1e+02 3.3 0.0 26 44 158 176 146 181 0.85 2 9 0.033 4.8e+02 2.2 0.0 20 52 261 293 249 294 0.74 3 9 0.035 5e+02 2.1 0.1 23 33 292 302 284 321 0.76 4 9 0.0026 37 5.8 0.0 22 46 319 343 310 349 0.84 5 9 0.013 1.8e+02 3.5 0.0 21 48 346 372 342 375 0.87 6 9 0.003 42 5.6 0.1 23 47 404 428 397 435 0.83 7 9 0.094 1.3e+03 0.8 0.1 21 43 430 452 425 457 0.72 8 9 0.0016 23 6.4 0.1 21 49 458 486 450 489 0.86 9 9 0.0015 21 6.6 0.1 21 49 486 518 483 523 0.78
Sequence Information
- Coding Sequence
- atggatTGTTTATTGAACATTTGCCGAGCCTGTCTGACCGAACAGGGAGATTTCCAGTCAGTTTTCATTTCGGAAGAATCCTGTGGATTGAATATTCATCTGGCAGAAATGCTCATGGCTTGCGCTTCCATTCAGGTGACTTTTGGGGATGGACTCCCTGAACAAATATGTAAAGGATGTGCGGAAAAAACTGTCAGTATGTTTCTATTCAAAATCAAATGTGAAGAAAGTGACTCCAGACTGAGGAACCAACTTGGGAAGTCACCGCTAAAAGAAGATTATATCTCATTACCTTTTGACAATATATCAGATTCCAATGCTATTTTGGACGATTCACCACCCCCGTTACTCGATATCGACGATCCAAATAGCGATGCTATTATCAAGGGTGACCTTGGGGATGTATTCGCTGTTGAATTTGAAGAACTGAATAAAAATCAGGAGAGTGAAGACAATACCAAAGGCAATTACAAGTGTACTTTATGCCCTAAAGTATACAACAGATCCTCTAATCTATTAAGACATGAAAAATTCCATAGGAATGACCAGAATTTCAAGTGCGAGTTGTGTGATAAAAAATTCACCAGGGAAGATTTATTggaacggcacaaattggcacacgCTAAAAGAAATAACCAAGAACTTGatcgatgtatatcttctgATTCTAAAGACTGCACAACCAAAGAAAATATCTCAGATGAAAAAACCAAAAGCATTGCAAATAACGTAGAAGGTAAAGAGACAGAAGACACTGAAGAAATTGGAAAGAGTGATGAAGTTGTGGAGAAAGACTACAAGTGTGGGATTTGTAAAAAAAAGTTCGTTAAGATTTCAAGGTTAAACAGACACTTGAAGACGCATTCGACGGTAAAACCATTCACTTGTCAGATTTGTTTTAAAGGTTTCGCTAGACAAGAATTGCACAAAAATCACATGAATAGCCATACAGGGAATAAGCCTCATGTGTGCAGTATCTGCAAAAAAGGATTCAACCAAATTTCGAACTTGAAAGATCACATGAGGACCCATAACGGAGAGAAACCTTTTCTGTGTTCGACTTGCGGAAAAGGTTTCAATCAATTGGGCAATCTGAGGCAGCACACAGTGCGACACAGCGGCGTTAAGGCTCACATTTGCAGTATGTGCGGCAACGGATTCGCCAGTAAGGGTGAACTGTCCGCTCACCTGCGAAAGCATACAGGTGCTAGACCGTTTGTATGTCCGATCTGCCAGAGCGGCTTCACCACCTCAAGTTCTCTGACGAAACACAAAAGAATACATTCCGGGGAGAAGCCATACGAATGTGACGTTTGCCACATGAAGTTTTCAAGGAACGGTATTTTATCAAGACACAAAAGAATTCATACAGGGGAAAAACCGTATGTTTGTAAATATTGCAGCAAGGCTTTCACACAATCCAACGATCTCAATTCGCATCTCAGGATTCACACAGGAGAGAAACCCTTCATTTGTGACCAGTGCGGACAGGCGTTCAGGCAGTCGTCGGCCTTGAAAACTCACAAGAGAACCCACGCTGAAATCAGGACTTTTCCGAATTCCGACGTGGAAGGAAAAGAAGCGTTGCCGCCGAAAGATGGGGGAAAGGCTTTCCTGGAGGCTCGCTTCGATTTCGGGACAAACGCTTGGACTTACATTAAGAAAATCGACCAGGAAGTGTGA
- Protein Sequence
- MDCLLNICRACLTEQGDFQSVFISEESCGLNIHLAEMLMACASIQVTFGDGLPEQICKGCAEKTVSMFLFKIKCEESDSRLRNQLGKSPLKEDYISLPFDNISDSNAILDDSPPPLLDIDDPNSDAIIKGDLGDVFAVEFEELNKNQESEDNTKGNYKCTLCPKVYNRSSNLLRHEKFHRNDQNFKCELCDKKFTREDLLERHKLAHAKRNNQELDRCISSDSKDCTTKENISDEKTKSIANNVEGKETEDTEEIGKSDEVVEKDYKCGICKKKFVKISRLNRHLKTHSTVKPFTCQICFKGFARQELHKNHMNSHTGNKPHVCSICKKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGVKAHICSMCGNGFASKGELSAHLRKHTGARPFVCPICQSGFTTSSSLTKHKRIHSGEKPYECDVCHMKFSRNGILSRHKRIHTGEKPYVCKYCSKAFTQSNDLNSHLRIHTGEKPFICDQCGQAFRQSSALKTHKRTHAEIRTFPNSDVEGKEALPPKDGGKAFLEARFDFGTNAWTYIKKIDQEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00020692;
- 90% Identity
- iTF_00020692;
- 80% Identity
- iTF_00020692;