Adec032454.1
Basic Information
- Insect
- Adalia decempunctata
- Gene Symbol
- Prdm9
- Assembly
- GCA_951802165.1
- Location
- OX637702.1:25215991-25254598[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-06 0.11 13.8 0.0 22 51 118 147 112 149 0.90 2 4 0.83 1.2e+04 -2.3 0.0 17 40 216 239 214 242 0.76 3 4 0.074 1.1e+03 1.1 0.0 26 44 562 580 560 588 0.88 4 4 1.5e-05 0.21 12.9 0.0 25 51 700 726 693 728 0.92
Sequence Information
- Coding Sequence
- aTGTACAGACACCTGGATAGAGCCAAGGATATAAAAATTTTAAGAAGCTCGAAGGAATTGGACGGTAAAGTTACTAAGAATATCATAGAAGTggatttttccgaattcaaaaTGGATATTGCAAAATATGAATGTGGAAAATGTAATTATGCAACTCCGGAAATTACAGTTATCAAAAATCATCTTAAAACACATTCGAAACGAACCATTTTCTCATGTTACTCTTGTGAATATACCTCAACGAACCTGAACGAAGTAGAAGGACAcgttaaaaataatcatgaTTTGGCATGTCGTGATTGTAACGGAAATGAATTTTGTGGAAAACACATAGAGAAGAAAGTCGTGAACGAAGAAGGTCACACTTGTGGAATATGTGGACACGTAGCGACCAAAAGAAGTAATCTCAAAAGGCACATTGAAGCGGTGCATCTGGAAAAAAGGAATTACAAGTGTCAGTTATGCGACTATTCTGCGACTCATATGGGTGATCTTAAGAATCACATGAATTGTAAACATTCCAAATCTGAAAAATACGAATGCAGCCAATGTGATTTTCATACATTTTATAAAGTCAAAGCGGCAAAAAGCATCGAGGAGGATACAGATGAGGAGTTCAAAGTAAAAAAGATCATATTGGAGAAATCTGAAGGTAAGAGTATTGTTGCCGCTCACTGTCCATGGATGTGTGCCATTCTACAAACGTCGCCCGCGTTGAGCAAGCGAAACGGAGTACCGCGGTCCGAAAGACTTTTAGACGAGTTCCATCAACCAGATACCCTTGTTCGCTTCGAGCTGAGTCACGTTAACACCTACGTCAACTGCGACAACTGTGAGGAGGCATTCGTGGACAATTGCACTAGATGTGGACAACTTTCGTATCTGCAAGATGACAAGGCGGAAATGGGCGTAGAAAATAGGGCCAAACTGACACTGCCAAAGAGCGTATTGTACATTTCACCTTCTCCAATCCACGGTTTGGGAATCTTCGCCAGAGTTCCCCTAAAAAAAGGAATAAAGATGGgtccatatgaaggaaaaataaCGAAAGTGGAAAATACAACAGGATATTCTTGGAAATTAAGAGATGGAAGATTGGTTGATGGCGCCGATGAAAAATTCTCCAATTGgatgagATACATAAATTGTGCTCGGCACCACGAAGAGCAAAATCTGGTGGCGTTCCAGTTCAAAGGAAATCTGTACTACCGGACTTGCAGAGACATAGGAGTTGGTCAAGAATTGTTGGTGTATTATGGACAGAGTTTCGCTGAAAATTTGGGAATTGACGTCCGTAACTATTTCAAGCCGAAAGAAGAAAAAATATGGATGAATTCTAAATGTTGCACATTTTGCAATTACGGTTACAAGGATATCGAAAAATTGAGATATCATATGAAGGTGTGTAAATGGAATCCAGATAACGTTAAAAAAATTCCAGAGAAGATATTTTATTGCAAGTTTTGTCCTGCTGGAATGGGTAGCGAGGATGATATTATGAAACATGAGAAACATTGTGGAAGGAGAAAATATAGAAGaattgaaGAAGTTAAGAAAATGGACAAGCGAAAAGAGAGGACGTTGGAAGAAAGGATATTTCATTGTGAAAATTGCAATTATTCAACGAATATCAGAGGACATTTATTAGGGCACCAAAATTTACAtgacaaatttttcaaattcacttgTAAAATATGTGAAAAAGGCTGCAATCAATACACAAAACTGAGGAATCATATGTTCAAGCACCTGGATATGGCCAAAAATATAACAATTTTAAGAAGCTCGAAGGAATTGGACGGTAAAGTTACTAAGAACACCATCGAAGTggatttttccgaattcaaaataaatattgaaacaTTTGAATGTGTAAAATGTAATTATGCTACTCCAGAAATTACACATATCAAACGTCATCTTAAAACACATTCGAAACGAAAGATTTTCTCATGTTACTCTTGTGAATACACCTCTACGAACTTGAAAGAAGTAGAAGAACAcgttaaaaataatcatgaTTTGGCATGTCGAGATTGTAACGGAAATGAATTTTGTGGAAAACACATAAAGAAGAAAGACGTGAACGGAGAAGGTCACACTTGTGGAATATGTGGACACGTAGCCACCCAAAGAAGTAATCTCAAAAAGCACATTGAAGCGGTGCATCTGGAAAAAAGGAATTACAAGTGTCAGTTATGCGACTATTCTGCGACTCATATGGGTGATCTTAAGAATCACATGAATTGTAAACATTCCAAATCTGAAAAATACGAATGCAGCCAATTCAAAGCGGCAAAAAGCATCGAGGAGGATACAGATGAGGAGTTCAAAGTAAAAAAGATCATATTGGAGAAATCTGAAGTTCGCCGTAATCCTAAGAGGCAGATTGAAgtgaaaaattatgaggaagtgGAAGAACCAGAGGATGATCGATACGTTTACTGCGACAACTGTGAGGAGGCATTCGTGGACAATTGCACTAGATGTGGACAACTTTCGTATCTGCAAGATGACAAGGCGGAAATGGGCGTAGAAAATAGGGCCAAACTGACACTGCCAAAGAGCGTATTGTACATTTCACCTTCTCCAATCCACGGTTTGGGAATCTTCGCCAGAGTTCCCCTAAAAAAAGGAATAAAGATGGgtccatatgaaggaaaaataaCGAAAGTGGAAAATACAACAGGATATTCTTGGAAATTAAGAGATGGAAGATTGGTTGATGGCGCCGATGAAAAATTCTCCAATTGgatgagATACATAAATTGTGCTCGGCACCACGAAGAGCAAAATCTGGTGGCGTTCCAGTTCAAAGGAAATCTGTACTACCGGACTTGCAGAGACATAGGAGTTGGTCAAGAATTGTTGGTGTATTATGGACAGAGTTTCGCTGAAAATTTGGGAATTGACGTCCGTAACTATTTCAAGCCGAAAGAAGAAAAAATATGGATGAATTCTAAATGTTGCACATTTTGCAATTACGGTTACAAGGATATCGAAAAATTGAGATATCATATGAAGGTGTGTAAATGGAATCCAGATAACGTTAAAAAAATTCCAGAGAAGATATTTTATTGCAAGTTTTGTCCTGCTGGAATGGGTAGCGAGGATGATATTATGAAACATGAGAAACATTGTGGAAGGAGAAAATATAGAAGGATGTATTCATTCGAAAAGGAGCAGAAGCGTCTAGAAATATTGATGAAGGAATGCCTGAGAGAAGATGAACTCGATGAATCAAACGTCCATTATGATGATCAATCAGATCTAGATGAAGAAGAGGATTTTCCTGCCCTGTGA
- Protein Sequence
- MYRHLDRAKDIKILRSSKELDGKVTKNIIEVDFSEFKMDIAKYECGKCNYATPEITVIKNHLKTHSKRTIFSCYSCEYTSTNLNEVEGHVKNNHDLACRDCNGNEFCGKHIEKKVVNEEGHTCGICGHVATKRSNLKRHIEAVHLEKRNYKCQLCDYSATHMGDLKNHMNCKHSKSEKYECSQCDFHTFYKVKAAKSIEEDTDEEFKVKKIILEKSEGKSIVAAHCPWMCAILQTSPALSKRNGVPRSERLLDEFHQPDTLVRFELSHVNTYVNCDNCEEAFVDNCTRCGQLSYLQDDKAEMGVENRAKLTLPKSVLYISPSPIHGLGIFARVPLKKGIKMGPYEGKITKVENTTGYSWKLRDGRLVDGADEKFSNWMRYINCARHHEEQNLVAFQFKGNLYYRTCRDIGVGQELLVYYGQSFAENLGIDVRNYFKPKEEKIWMNSKCCTFCNYGYKDIEKLRYHMKVCKWNPDNVKKIPEKIFYCKFCPAGMGSEDDIMKHEKHCGRRKYRRIEEVKKMDKRKERTLEERIFHCENCNYSTNIRGHLLGHQNLHDKFFKFTCKICEKGCNQYTKLRNHMFKHLDMAKNITILRSSKELDGKVTKNTIEVDFSEFKINIETFECVKCNYATPEITHIKRHLKTHSKRKIFSCYSCEYTSTNLKEVEEHVKNNHDLACRDCNGNEFCGKHIKKKDVNGEGHTCGICGHVATQRSNLKKHIEAVHLEKRNYKCQLCDYSATHMGDLKNHMNCKHSKSEKYECSQFKAAKSIEEDTDEEFKVKKIILEKSEVRRNPKRQIEVKNYEEVEEPEDDRYVYCDNCEEAFVDNCTRCGQLSYLQDDKAEMGVENRAKLTLPKSVLYISPSPIHGLGIFARVPLKKGIKMGPYEGKITKVENTTGYSWKLRDGRLVDGADEKFSNWMRYINCARHHEEQNLVAFQFKGNLYYRTCRDIGVGQELLVYYGQSFAENLGIDVRNYFKPKEEKIWMNSKCCTFCNYGYKDIEKLRYHMKVCKWNPDNVKKIPEKIFYCKFCPAGMGSEDDIMKHEKHCGRRKYRRMYSFEKEQKRLEILMKECLREDELDESNVHYDDQSDLDEEEDFPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -