Apis015560.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:170214950-170221201[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0085 4.4 7.4 0.0 21 44 173 196 167 204 0.86 2 6 0.029 15 5.7 0.1 21 43 201 223 196 228 0.88 3 6 0.13 65 3.7 0.0 14 43 221 251 218 261 0.75 4 6 0.053 27 4.9 0.1 22 44 286 308 277 312 0.87 5 6 0.014 7.1 6.7 0.0 21 43 313 335 308 342 0.86 6 6 2.1 1.1e+03 -0.2 0.1 20 38 340 358 333 365 0.72
Sequence Information
- Coding Sequence
- ATGGAACCATTAAGAAATACTATTAATGATCGCGCAGTAAATTCCAAgtatgatCAAGCAATTGTTAAACAAGAAAACATTTATGTCATTGATGTTAACAAAGTTATTAAAAGTGAATATGTTGATGAAACAGACCACAATAATGATAGTTCATTATTAGAAACAGAaactAAATGTAAAACTGAAGAAAAAGTAAACACTACAGATAGCGaaataaaaattgagaaaaatgttGGTGACGGTAATAACTTTGAAGGGACAGTTTTTAGTCAAAGCCATTCTTCAAAACTTATTAACCATGTGAATCTGGACAAAAAATCTACCGAAAGAGAATTCATTTGTGATAAATCTTTTCATATTAAATCACAAGTGAGAAAACACATACAGTCTGTCtgtaataaaactttaaaagttcaCACGAGGACACACACTGGAGTAAAACCTTTTAGATGTGGTATGTGTAAACGAACTTTTTCTACATCATCAAGTTTAAATGTGCATGGAAGGACACATACCGGGGAAAAGCcattcaaatgtaatatttgtagTCAAACGTTTTCTCAATCAGCAACTTTAAAAAATCACACGAGGAaacacactggagaaaaaccttttagatgtaatatttgtaatctAACGTTTTCCCAATCAACAACTTTAAAAGTTCACTCGAGGACACACACCGGTGAAAAGCCATTCAAATGTGATATTTGTAGTAAAACGTTTTCTCAATTAGCAGCTTTAGAAGTTCACAAGAGGAAACATACCGGTGAAAAGCCATTTAAAAGTGGTATTTGTAATCGAACTTTTTCTTGTGCATCACATTTGAAATACCATACTACGACACGCACTGAAGATAAACCTTTTAGATGTGATATTTGTAGTCAAACGTTTTCTCAATCAACAACTTTAAAAGCTCACACGAGGACACATACTGGCGAAAAGCCATTTAAATGTGATATATGTGGTGCAGCGTTTTCTCAATCATTTAGTTTAACAGTGCATAAGAGAAAACATACAAAAGAAATGCCATTTAAATGTGGTATCTGTAATCGAACTTTTTCTTATGCAACACATTTTAGATATCATACTATGACACACACTGAATAA
- Protein Sequence
- MEPLRNTINDRAVNSKYDQAIVKQENIYVIDVNKVIKSEYVDETDHNNDSSLLETETKCKTEEKVNTTDSEIKIEKNVGDGNNFEGTVFSQSHSSKLINHVNLDKKSTEREFICDKSFHIKSQVRKHIQSVCNKTLKVHTRTHTGVKPFRCGMCKRTFSTSSSLNVHGRTHTGEKPFKCNICSQTFSQSATLKNHTRKHTGEKPFRCNICNLTFSQSTTLKVHSRTHTGEKPFKCDICSKTFSQLAALEVHKRKHTGEKPFKSGICNRTFSCASHLKYHTTTRTEDKPFRCDICSQTFSQSTTLKAHTRTHTGEKPFKCDICGAAFSQSFSLTVHKRKHTKEMPFKCGICNRTFSYATHFRYHTMTHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019600;
- 90% Identity
- iTF_00019600;
- 80% Identity
- iTF_00019600;