Apis000877.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:118808088-118809753[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 14 5.8 0.1 20 44 29 53 21 61 0.84 2 12 0.32 1.6e+02 2.4 0.1 21 43 58 80 54 89 0.81 3 12 0.51 2.6e+02 1.7 0.1 21 43 86 108 77 113 0.76 4 12 0.26 1.3e+02 2.7 0.0 20 43 113 136 102 141 0.77 5 12 0.34 1.7e+02 2.3 0.1 20 43 141 164 132 169 0.78 6 12 0.0057 2.9 8.0 0.0 21 44 170 193 162 201 0.85 7 12 0.62 3.2e+02 1.5 0.1 21 41 198 218 193 224 0.71 8 12 0.12 61 3.8 0.1 21 43 226 248 218 253 0.85 9 12 0.42 2.1e+02 2.0 0.0 21 43 254 276 247 280 0.80 10 12 0.03 15 5.7 0.0 20 44 281 305 273 315 0.82 11 12 0.82 4.2e+02 1.1 0.1 21 34 310 323 305 341 0.72 12 12 0.34 1.7e+02 2.3 0.1 20 43 337 360 329 365 0.78
Sequence Information
- Coding Sequence
- ATGGAGAAGAACTCTTACCTGTGTGACGTATGTGACAAGTCATTCAGCCAAATTGGAAATTTGATGATACATCGACGTACgcacactggcgaaaaaccTTACGCATGCGATATATGCGACAAATCTTTCTCTCAAAGTTGCAGTTTAACGAACCATAAACGCACacacactggcgaaaaaccgTATGCATGCGAtatatgcgacaagtcgtttgCTCGAAGTGACAGTTTAACGAACCATAAACGCACacacactggcgaaaaaccgTATGCATGCGAtatatgcgacaagtcgtttgTTCTAAGTGGCAGTTTAACGAAACACAAACGCACACACACAggtgaaaaaccgtacgcatgcgatatatgcgacaagtcgttcgCTGTAAGTGGCAGTTTAACGAAACACCAACGAACACACACAggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctACGAGTAGCAGTTTGACGACACATCGACGTACGCATATTGGCGAAAAACCATATGtatgcgatgtatgcgacaaaTCTTTCTCTCAAAGTGGCAATTTAACGAAACACCAACGAACacacactggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgtttgCTGTAAGTGACAGTTTAACGAACCAcaaacgcacacacactggtgaaaaaccgtacgcatgcgatgtatgcgacaaaTCTTTCTCTCAAAGTTGCAGTTTAACGAACCATAAACGCACacacactggcgaaaaaccgTATGCATGCGAtatatgcgacaagtcgtttgCTCTAAGTGACAGTTTAACGAAACACAAACGCACACACACAGGAGAAAAACCTTACGCATGCGAtatatgcgacaagtcgttcgctataagtaataatttaacgaACCACCAACGAACACACACAggtgaaaaaccgtacgcatgcgatatatgcgacaagtcgttcgCTATAAGAAATGATTTAACGAAACACCAACGAACACACACAggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctACGAGTAGCAGTTTGACGACACATCGACGTACGCACACTGTTAAAATGGAGCTCAGAACTTCTCTATAA
- Protein Sequence
- MEKNSYLCDVCDKSFSQIGNLMIHRRTHTGEKPYACDICDKSFSQSCSLTNHKRTHTGEKPYACDICDKSFARSDSLTNHKRTHTGEKPYACDICDKSFVLSGSLTKHKRTHTGEKPYACDICDKSFAVSGSLTKHQRTHTGEKPYACDICDKSFSTSSSLTTHRRTHIGEKPYVCDVCDKSFSQSGNLTKHQRTHTGEKPYACDICDKSFAVSDSLTNHKRTHTGEKPYACDVCDKSFSQSCSLTNHKRTHTGEKPYACDICDKSFALSDSLTKHKRTHTGEKPYACDICDKSFAISNNLTNHQRTHTGEKPYACDICDKSFAIRNDLTKHQRTHTGEKPYACDICDKSFSTSSSLTTHRRTHTVKMELRTSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019503;
- 90% Identity
- iTF_00019503;
- 80% Identity
- iTF_00019503;