Apis002318.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:44759225-44760537[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3 1.2e+03 -0.3 0.0 26 43 5 22 2 31 0.83 2 15 1.8 9.4e+02 -0.0 0.1 20 39 27 46 21 53 0.74 3 15 0.01 5.3 7.2 0.1 20 44 55 79 48 87 0.85 4 15 0.7 3.6e+02 1.3 0.1 21 43 84 106 79 115 0.75 5 15 1.1 5.5e+02 0.7 0.1 21 43 112 134 100 138 0.79 6 15 0.0013 0.66 10.1 0.5 20 43 139 162 133 167 0.88 7 15 0.17 87 3.3 0.0 22 47 169 194 163 200 0.81 8 15 0.7 3.6e+02 1.3 0.1 21 41 196 216 191 222 0.77 9 15 0.65 3.3e+02 1.4 0.1 20 40 223 243 216 250 0.74 10 15 0.53 2.7e+02 1.7 0.0 20 43 251 274 242 283 0.76 11 15 1.4 7.3e+02 0.3 0.0 21 43 280 302 269 312 0.77 12 15 1.1 5.6e+02 0.7 0.1 21 43 308 330 300 334 0.80 13 15 0.07 36 4.5 0.0 21 44 336 359 331 369 0.86 14 15 1.8 9.4e+02 -0.0 0.2 20 40 363 383 357 390 0.72 15 15 0.0087 4.4 7.4 0.1 21 44 392 415 385 424 0.86
Sequence Information
- Coding Sequence
- ATGAAAGCTTACAcatgcgatgtatgcgacatgTCTTTTAGTCAAAGTGGGTATTTGACTACTCATCGACGTACCCACACGGGTGAGAAACCATTtgcgtgcgatgtatgcgaaaagACGTTTACTGAAAGTAGCATATTGGCGTGTCACCGTCGGACTCACACGGACGAGAAACCATAcgcatgcgatgtatgcgaTATGTCATTCAGTCAAAGTGGTCATTTGACAAGACATCGTCGGACCCACACTGGGGAGAAGCCTTTTGCGTGTGATATATGTGACAAATCGTTTGCTACAAGTGGCACATTAACGTATCATCATCGGACTCACACAGGCGAGAAACCTTAcgcatgcgatgtatgcgaaaagACGTTTGCTGAAAGTAGCACATTGACATGTCACCGTCGGACTCACACGGGCGAGAAACCATAcgcatgcgatgtatgcgaTATGTCGTTCAGTCAAAGTTGTAATTTGACAAGACATCGTCGGACCCACACTGGCGAGAAACTATACGCATGTGATGTATGTGGCATGTCGTTCAATCAAAGTGGTCATTTGACAAGACATCGACGGATCCACACTGGTGAGAAGCCTTTTGCGTGTGATATATGTAACAAATCGTTTGCTACAAGTGACACATTAACGTATCATCGTCGGACCCACACTGGGGAGAAGCCTTTTGCGTGTGATATATGTGACAAATCGTTTGCTGCAAGTGACACATTAACGTATCATCGTCGGACCCACACTGGGGAGAAGCCTTTTGCGTGTGATATATGTGACAAATCGTTTGCTACAAGTGGCACATTAACGTATCATCATCGGACTCACACAGGCGAGAAACCTTAcgcatgcgatgtatgcgaaaagACGTTTGCTGGAAGTAACACATTGACAATACATCAACGAACCCACACTGGCGAGAAACCATTtgcgtgcgatgtatgcgaaaagACGTTTGCTAGAAGTAACACATTGACAATACATCAACGAACCCACACTGGCGAGAAACCATTtgcgtgcgatgtatgcgaaaagACGTTTACTGAAAGTAGCACATTGACAAGACATCGTCGGACCCACACTGGTGAGAAACCATTTGCGTGCGATGTATGTGACAAATCATTTGCTACAAGTTACACTTTATTGAATCACCATAGGACTCACACGGGCGAGAAACCATACGCATGCGATGTATGTAACATGTCGTTCAGTCAAAGTGGTCATTTGACAAGACATCGACGGACCCACACTGGTGAGAAACCATTTACGTACGATCTATGCCATAAGTAA
- Protein Sequence
- MKAYTCDVCDMSFSQSGYLTTHRRTHTGEKPFACDVCEKTFTESSILACHRRTHTDEKPYACDVCDMSFSQSGHLTRHRRTHTGEKPFACDICDKSFATSGTLTYHHRTHTGEKPYACDVCEKTFAESSTLTCHRRTHTGEKPYACDVCDMSFSQSCNLTRHRRTHTGEKLYACDVCGMSFNQSGHLTRHRRIHTGEKPFACDICNKSFATSDTLTYHRRTHTGEKPFACDICDKSFAASDTLTYHRRTHTGEKPFACDICDKSFATSGTLTYHHRTHTGEKPYACDVCEKTFAGSNTLTIHQRTHTGEKPFACDVCEKTFARSNTLTIHQRTHTGEKPFACDVCEKTFTESSTLTRHRRTHTGEKPFACDVCDKSFATSYTLLNHHRTHTGEKPYACDVCNMSFSQSGHLTRHRRTHTGEKPFTYDLCHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019511;
- 90% Identity
- iTF_00019514;
- 80% Identity
- iTF_00019511;