Apis009473.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:31275164-31283803[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.68 3.5e+02 1.3 0.0 29 43 184 198 180 202 0.86 2 6 0.0038 1.9 8.6 0.2 22 44 233 255 224 264 0.86 3 6 0.0083 4.2 7.5 0.0 21 44 288 311 270 319 0.86 4 6 0.97 5e+02 0.8 0.0 22 45 317 340 314 348 0.82 5 6 0.19 96 3.1 0.3 22 43 373 394 359 398 0.85 6 6 0.036 18 5.4 0.0 22 46 401 425 395 432 0.83
Sequence Information
- Coding Sequence
- ATGGAACAATTTAGAAAGTCTAAAAATGATTCTGAAGTAAATTCTAAGTATGATAGTAATATGCACAGTATAATGCACAGTTCTAGAGTGCTGAAGCCACTTATTAAATATGACAATCAAGTGTTCATTAGTGTTGTTAAACAAGAATTTATTGATGATACTGATCATAATGATGTTAATCAATTTTTACAAATGGGagCCAAATGCGAATTTGAAGGAGAAATAATCACAACCGATACtgtaataaaaatcgaaaaagatTTGAACGACGATTATGTGTTGGAAGGGTCAGTTAAAAACGAATGCCATTCGTCGGAACTGATTGTTCAAATTAATTCAGAAGAGACAACGCATTTAAGGCAAACATTATCAAATTCTGATACATTATTTAACTCAAAAAGACTCCTTTCAAGACCTTCAACGATTCATACcagccaaataaaaaaaaggtttatttgTGACAATTGTGAAGAGATACATTATAGTAAATCTGATTTGATTACACACATATTGCGTTGTACAGGAAgaaaggtacataataaatcTGGTATATGTGATAAAGAGTTTTCTCAAGCAAGAGATTTAAAAAGGCATAAAATGATATATACAGGAGATAAGGCACATAAACGTGATATCTGTGATAAAAGGTTTTCTTCACTAGTTCATATAAAAGACCATATGAGAACACATACAGGAGATAAGCCTTTTGAATGTAATATCTGCAATAAAAGATTTTCTCAAGCaagatatttaaaaaggcaTAAAATGATCCATACAAGAGATAAGGCACATAAATGTGATATCTGTAATAAAAGGTTTTTTCAAGCAGGAGatttaaatactcataaaagGACACATACAGGAGATAAGCCTTTTAAATGTGATATCTGTAATAAAAGATTTTCTCAATCAGGAAATTTAAAAAcgcataaaattatacatacaggAGATAAGCCTTTTGAATGTGATATCTGCaataaaagattttttcaaGCAGGAGATTTAAAAACGCATAAAATGATACATACAGGAGAAAAACCTTTTAAATGTGATAGCTGCAATAAAGAATTTACTGTAgcaggaaatttaaaaatccataaaagGACACATACAAGAGATAAGCCTTATAAATGTGATAGCTGCAATCAAGGGTTTTCTCAAGCAGCACATTTAAGAAGACATAAGAGGACACATACAGGAGATAAGCCTTTTGAATGTGATATCTGCAATAAAAGATTTTCTGAAGCAGGAAATTTAAAAAGGCATAAAATGATCCATACAGGAGATAAGCCACATAAATGTGATATCTGA
- Protein Sequence
- MEQFRKSKNDSEVNSKYDSNMHSIMHSSRVLKPLIKYDNQVFISVVKQEFIDDTDHNDVNQFLQMGAKCEFEGEIITTDTVIKIEKDLNDDYVLEGSVKNECHSSELIVQINSEETTHLRQTLSNSDTLFNSKRLLSRPSTIHTSQIKKRFICDNCEEIHYSKSDLITHILRCTGRKVHNKSGICDKEFSQARDLKRHKMIYTGDKAHKRDICDKRFSSLVHIKDHMRTHTGDKPFECNICNKRFSQARYLKRHKMIHTRDKAHKCDICNKRFFQAGDLNTHKRTHTGDKPFKCDICNKRFSQSGNLKTHKIIHTGDKPFECDICNKRFFQAGDLKTHKMIHTGEKPFKCDSCNKEFTVAGNLKIHKRTHTRDKPYKCDSCNQGFSQAAHLRRHKRTHTGDKPFECDICNKRFSEAGNLKRHKMIHTGDKPHKCDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019574;
- 90% Identity
- iTF_00019574;
- 80% Identity
- iTF_00019574;