Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: -
Assembly: GCA_005508785.1
Location: NC:92729590-92732081[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3 6.8e+02 0.4 0.1 16 44 60 88 55 98 0.80

2 14 7.7 3.9e+03 -2.0 0.1 21 30 93 102 87 108 0.83

3 14 0.023 12 6.1 0.0 20 44 148 172 140 180 0.84

4 14 2.5 1.3e+03 -0.5 0.1 21 43 177 199 172 210 0.78

5 14 1.5 7.4e+02 0.3 0.1 19 43 203 227 192 231 0.75

6 14 0.01 5.2 7.2 0.2 19 43 231 255 219 260 0.83

7 14 0.15 78 3.4 0.0 20 44 260 284 255 294 0.83

8 14 0.0087 4.4 7.4 0.1 20 44 316 340 308 350 0.82

9 14 0.44 2.2e+02 2.0 0.1 21 43 345 367 340 372 0.87

10 14 0.023 12 6.0 0.0 11 44 362 396 359 406 0.77

11 14 0.5 2.5e+02 1.8 0.1 20 43 400 423 395 429 0.80

12 14 0.69 3.5e+02 1.3 0.1 20 43 428 451 421 456 0.78

13 14 0.0089 4.5 7.4 0.1 19 44 455 480 449 490 0.83

14 14 0.085 43 4.2 0.2 19 43 511 535 499 539 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3	6.8e+02	0.4	0.1	16	44	60	88	55	98	0.80
2	14	7.7	3.9e+03	-2.0	0.1	21	30	93	102	87	108	0.83
3	14	0.023	12	6.1	0.0	20	44	148	172	140	180	0.84
4	14	2.5	1.3e+03	-0.5	0.1	21	43	177	199	172	210	0.78
5	14	1.5	7.4e+02	0.3	0.1	19	43	203	227	192	231	0.75
6	14	0.01	5.2	7.2	0.2	19	43	231	255	219	260	0.83
7	14	0.15	78	3.4	0.0	20	44	260	284	255	294	0.83
8	14	0.0087	4.4	7.4	0.1	20	44	316	340	308	350	0.82
9	14	0.44	2.2e+02	2.0	0.1	21	43	345	367	340	372	0.87
10	14	0.023	12	6.0	0.0	11	44	362	396	359	406	0.77
11	14	0.5	2.5e+02	1.8	0.1	20	43	400	423	395	429	0.80
12	14	0.69	3.5e+02	1.3	0.1	20	43	428	451	421	456	0.78
13	14	0.0089	4.5	7.4	0.1	19	44	455	480	449	490	0.83
14	14	0.085	43	4.2	0.2	19	43	511	535	499	539	0.82

Sequence Information

Coding Sequence: atgaataatttaactgGTTTTCCAGTGAAGAAACAGTACTCGTGTGACCTTTGTAATAAATTCTTTACGTATAGATGCAGCTTGACTATACACCACCGGACACATAAGAAGAAGAAACTTTGCTTGTGTGATGTCTGCGACAAGTCGTTTGCTAAAATGTGTACATTGACGAGTCATCGAAGTACCCTCACGGATGAGATACCATACATATGCAATGTATGCAACATGTCGTTCAGTGAAAGTGACATGTTAATGCAACATCAACGTACCCACACTAGAGAGAAACCACATGCGTGCGAAGTATGTGACAAGTCATTTGTTAAAATGTGTACATTGATGAGTCATCAACGGACCCACACGGGTGAGAAACCATACATATACGATGTATGCGATAaatcattcagtcaaaatgGCTCATTGACGAGTCATCGACGGACccacacaggagagaaaccatTTGCGTGCGATATATGTGATAAGACGTTTGCTGAAAGTAGTTCATTGACGCGTCATCGACGGACTcacacaggagagaaaccatACAACTGCGATGTATGCGATAAATCATTCAGTGAAAGTGGGACATTAACGAGTCATCGTCGGACCCACACAGGTGAGAAACCATACAACTGCGATGTATGTGATAAATCATTCAGTAAAAGTGGGACATTGACGAGTCATCGACGGACCCACACGGGCGAGAAACCAtacgcgtgcgatgtatgcgacatgTCTTTCAGTCAAAGTTGCAATTTGACAACACATCGACGAACCCACACGGGTGAGAAACCATACAACTGCGATGTATGTGATAAATCATTCAGTAAAAGTGGCAATTTGACGAGTCATCGACGGACCCACACGGGTGATAAACCATACATATGCGATGTTTGCGAAAAATCATTTGctaaaatgtgtatattgaAAACACATCGTCGGACCCACACGGGCGAGAAACCAtacgcgtgcgatgtatgcgacatgTCTTTCAGTCAAAGTTGCAATTTGACAACACATCGACGGACCCACACAGGCGAGAAACCATACATATGTGATGTATGCGTGAAATCATTCAGTGAAAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatacgcgtgtgatgtatgcgacATGTCTTTCAGCCAAAGTGGCTCATTGACGAGTCATCGACGGACccacacaggagagaaaccatTTGCTTGCGATATATGTGACAAGTCGTTTGCTGAAAGTAGTTCACTGACGAGTCATCGACGAACCCACACAGGAGAGATACCATTTGCATGCGATATATGTCACAAGTCGTTTGCTGTAAGTAATTCATTGACGAGTCATCGACAGACCCACACGGGCGAGAAACCATTAgcatgcgatgtatgcgacatgTCTTTCAGTCAAAGTTGCAATTTGACAACACATCGACGAACCCACACGGGTGATAAACCATACATATGCGATGTTTGCGAAAAATCATTTGCTAAAATGTGTACATTGAAAACACATCGTCGGACCCACACGGGCGAGAAACCAtacgcgtgcgatgtatgtGATAAGTCATTCAGTAAAAGTTGCAATTTGACAACACATCAACGGACCCACACAGGAGAATTCTGA
Protein Sequence: MNNLTGFPVKKQYSCDLCNKFFTYRCSLTIHHRTHKKKKLCLCDVCDKSFAKMCTLTSHRSTLTDEIPYICNVCNMSFSESDMLMQHQRTHTREKPHACEVCDKSFVKMCTLMSHQRTHTGEKPYIYDVCDKSFSQNGSLTSHRRTHTGEKPFACDICDKTFAESSSLTRHRRTHTGEKPYNCDVCDKSFSESGTLTSHRRTHTGEKPYNCDVCDKSFSKSGTLTSHRRTHTGEKPYACDVCDMSFSQSCNLTTHRRTHTGEKPYNCDVCDKSFSKSGNLTSHRRTHTGDKPYICDVCEKSFAKMCILKTHRRTHTGEKPYACDVCDMSFSQSCNLTTHRRTHTGEKPYICDVCVKSFSESGTLKKHRRTHTGEKPYACDVCDMSFSQSGSLTSHRRTHTGEKPFACDICDKSFAESSSLTSHRRTHTGEIPFACDICHKSFAVSNSLTSHRQTHTGEKPLACDVCDMSFSQSCNLTTHRRTHTGDKPYICDVCEKSFAKMCTLKTHRRTHTGEKPYACDVCDKSFSKSCNLTTHQRTHTGEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019500;
90% Identity: iTF_00019500;
80% Identity: iTF_00019500;