Apis001950.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:44752100-44754714[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.4 1.2e+03 -0.4 0.0 25 43 14 32 10 40 0.85 2 15 1.5 7.6e+02 0.3 0.1 20 41 37 58 30 64 0.74 3 15 0.00095 0.48 10.5 0.2 21 44 66 89 59 99 0.86 4 15 0.88 4.5e+02 1.0 0.1 21 40 94 113 89 120 0.74 5 15 1.1 5.6e+02 0.7 0.1 21 43 122 144 108 147 0.78 6 15 0.0011 0.58 10.2 0.4 20 43 149 172 140 177 0.88 7 15 0.18 89 3.2 0.0 22 47 179 204 173 210 0.81 8 15 0.55 2.8e+02 1.6 0.1 21 43 206 228 200 237 0.78 9 15 0.73 3.7e+02 1.2 0.1 20 39 233 252 226 258 0.73 10 15 0.58 2.9e+02 1.6 0.1 20 43 261 284 254 293 0.75 11 15 1.3 6.8e+02 0.4 0.0 21 43 290 312 277 322 0.77 12 15 2.3 1.2e+03 -0.4 0.0 21 40 318 337 312 344 0.76 13 15 0.064 32 4.6 0.0 21 44 346 369 338 379 0.85 14 15 1.6 8.1e+02 0.2 0.1 20 43 373 396 368 401 0.76 15 15 0.0084 4.3 7.5 0.1 21 44 402 425 392 434 0.86
Sequence Information
- Coding Sequence
- ATGACGACACACGAGCGGACGTATATGAAGATGAAAGCTTACAcatgcgatgtatgcgacatgTCTTTTAGTCAAAGTGGGTATTTGACTACTCATCGACGTACCCACACGGGTGAGAAACCATTtgcgtgcgatgtatgcgaaaagACGTTTACTGAAAGTAGCATATTGACGTGTCACCATCGGACTCACACGGACGAGAAACCATAcgcatgcgatgtatgcgaTATGTCATTCAGTCAAAGTTGTAATTTGACAAGACATCGTCGGACCCACACTGGGGAGAAGCCTTTTGCGTGTGATATATGTGACAAATCGTTTGCTACAAGTGGCACATTAACGTATCATCATCGGACTCACACAGGCGAGAAACCTTAcgcatgcgatgtatgcgaaaagACGTTTGCTGAAAGTAGCACATTGACATGTCACCGTCGGACTCACACGGGCGAGAAACCATAcgcatgcgatgtatgcgaTATGTCGTTCAGTCAAAGTTGTAATTTGACAAGACATCGTCGGACCCACACTGGCGAGAAACTATACGCATGTGATGTATGTGGCATGTCGTTCAATCAAAGTGGTCATTTGACAAGACATCGACGGATCCATACTGGTGAGAAGCCTTTTGCGTGTGATATATGTAACAAATCGTTTGCTACAAGTGACACATTAACGTATCATCGTCGGACCCACACTGGGGAGAAGCCTTTTGCGTGTGATATATGTGACAAATCGTTTGCTGCGAGTGACACATTAACGTATCATCGTCGGACCCACACTGGGGAGAAGCCTTTTGCGTGTGATATATGTGACAAATCGTTTGCTACAAGTGGCACATTAACGTATCATCATCGGACTCACACAGGCGAGAAACCTTAcgcatgcgatgtatgcgaaaagACGTTTGCTGGAAGTAACACATTGACAATACATCAACGAACCCACACTGGCGAGAAACCATTtgcgtgcgatgtatgcgaaaagACGTTTGCTGGAAGTAACACATTGACAATACATCAACGAACCCACACTGGCGAGAAACCATTtgcgtgcgatgtatgcgaaaagACGTTTACTGAAAGTAGCACATTGACAAGACATCGTCGGACCCACACTGGTGAGAAACCATTTGCGTGCGATGTATGTGACAAATCATTTGCTACAAGTTACACTTTATCGAATCACCATAGGACTCACACGGGCGAGAAACCATACGCATGCGATGTATGTAACATGTCGTTCAGTCAAAGTGGTCATTTGACAAGACATCGACGGACCCACACTGGTGAGAAACCATTTACGTACGATCTATGCCATAAGTAA
- Protein Sequence
- MTTHERTYMKMKAYTCDVCDMSFSQSGYLTTHRRTHTGEKPFACDVCEKTFTESSILTCHHRTHTDEKPYACDVCDMSFSQSCNLTRHRRTHTGEKPFACDICDKSFATSGTLTYHHRTHTGEKPYACDVCEKTFAESSTLTCHRRTHTGEKPYACDVCDMSFSQSCNLTRHRRTHTGEKLYACDVCGMSFNQSGHLTRHRRIHTGEKPFACDICNKSFATSDTLTYHRRTHTGEKPFACDICDKSFAASDTLTYHRRTHTGEKPFACDICDKSFATSGTLTYHHRTHTGEKPYACDVCEKTFAGSNTLTIHQRTHTGEKPFACDVCEKTFAGSNTLTIHQRTHTGEKPFACDVCEKTFTESSTLTRHRRTHTGEKPFACDVCDKSFATSYTLSNHHRTHTGEKPYACDVCNMSFSQSGHLTRHRRTHTGEKPFTYDLCHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019514;
- 90% Identity
- iTF_00019514;
- 80% Identity
- iTF_00019514;