Apis004572.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NW:70035-71436[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.35 1.8e+02 2.3 0.0 20 43 29 52 24 57 0.78 2 13 0.01 5.2 7.2 0.2 20 43 57 80 48 93 0.78 3 13 5.8 3e+03 -1.6 0.1 22 43 87 108 75 113 0.73 4 13 0.046 23 5.1 0.0 20 43 113 136 103 144 0.84 5 13 0.049 25 5.0 0.0 20 43 169 192 159 197 0.84 6 13 0.075 38 4.4 0.0 21 44 198 221 190 229 0.84 7 13 1.3 6.5e+02 0.5 0.2 21 31 226 236 219 252 0.76 8 13 0.47 2.4e+02 1.8 0.0 20 39 253 272 243 281 0.70 9 13 0.089 45 4.2 0.2 21 43 282 304 274 317 0.78 10 13 4.8 2.5e+03 -1.4 0.0 22 43 311 332 305 341 0.76 11 13 0.45 2.3e+02 1.9 0.1 20 43 337 360 330 364 0.77 12 13 0.016 8.1 6.6 0.0 21 44 366 389 358 397 0.85 13 13 0.46 2.3e+02 1.9 0.1 21 42 394 418 390 427 0.67
Sequence Information
- Coding Sequence
- ATGGAGAAGAACTCTTACCTGTGTGACGTATGTGACAAGTCATTCAGCCAAATTGGAAAATTGATGATACATCGACGTACgcacactggcgaaaaaccTTACGCATGCGAtatatgcgacaagtcgtttgCTGTAAGTGACAGTTTAACGAAACAcaaacgcacacacactggtgaaaaaccgtacacatgcgatgtatgcgacaaaTCTTTCTCTCAAAGTTGCAGTTTAACGAACCATAAACGCACACACACTGGCGAAAAACATTATGCATGCGAtatatgcgacaagtcgtttgCTGTAAGTGACAGTTTAACGAAACACAAACGCACACACACAGGAGAAAAACCTTACGCATGCGAtatatgcgacaagtcgttcgctataagtaataatttaacgaACCACCAACGAACACACACTGGCGAAAAACTGTACGCATGCGAtatatgcgacaagtcgtttgCTGTAAGTGACAGTTTAACGAAACACAAACGCACACACACAGGAGAAAAACCTTACGCATGCGAtatatgcgacaagtcgttcgctataagtaataatttaacgaACCACCAACGAACacacactggcgaaaaaccgtacgcatgcgatgtatgcgacaagtcgttcagtgaaaataccaatttgaaaaaGCATCAACGCACACACACAggtgaaaaaccgtacgcatgcgatatatgcgacaagtcgtttgCTGTAAATGGCAGTTTAACGAAACAcaaacgcacacacactggtgaaaaaccgtacgcatgcgatatatgcgacaagtcgtttgCTGTAAGTGGCAGTTTAACGAATCAcaaacgcacacacactggtgaaaaaccgtacgcaTGTGATGTATGCGACAAATCTTTCTCTCAAAGTTGCAGTTTAACGAACCATAAACGCACACACACTGGCGAAAAACATTATGCATGCGAtatatgcgacaagtcgttcgCTATAAGTGATGATTTAACGAAACACCAACGAACACACACAggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctACGAGTAGCAGTTTGACGACACATCGACGTACGCATATTGGCGAAAAACCATATGtatgcgatgtatgcgacaaaTCTTTCTCTCAAAGTGGCAATTTAACGAACCAcaaacgcacacacactggcgaaaaaccTTACGCATGCGAtatatgcgacaagtcgttcgCTGTAAGTGGCAGTTTGACGAACCATCGACGTACGCACACTGTTAAAATGGAGCTCAGAACTTCTCTATAA
- Protein Sequence
- MEKNSYLCDVCDKSFSQIGKLMIHRRTHTGEKPYACDICDKSFAVSDSLTKHKRTHTGEKPYTCDVCDKSFSQSCSLTNHKRTHTGEKHYACDICDKSFAVSDSLTKHKRTHTGEKPYACDICDKSFAISNNLTNHQRTHTGEKLYACDICDKSFAVSDSLTKHKRTHTGEKPYACDICDKSFAISNNLTNHQRTHTGEKPYACDVCDKSFSENTNLKKHQRTHTGEKPYACDICDKSFAVNGSLTKHKRTHTGEKPYACDICDKSFAVSGSLTNHKRTHTGEKPYACDVCDKSFSQSCSLTNHKRTHTGEKHYACDICDKSFAISDDLTKHQRTHTGEKPYACDICDKSFSTSSSLTTHRRTHIGEKPYVCDVCDKSFSQSGNLTNHKRTHTGEKPYACDICDKSFAVSGSLTNHRRTHTVKMELRTSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019491;
- 90% Identity
- iTF_00019491;
- 80% Identity
- iTF_00019491;