Apis000321.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:71524043-71535300[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0024 1.2 9.2 0.1 21 46 246 271 233 274 0.87 2 7 0.87 4.4e+02 1.0 0.0 22 43 275 296 272 301 0.90 3 7 0.028 14 5.8 0.0 23 45 304 326 298 335 0.85 4 7 2.6 1.3e+03 -0.5 0.1 21 44 330 353 326 358 0.78 5 7 0.0055 2.8 8.1 0.0 21 46 358 383 351 391 0.86 6 7 5.2 2.6e+03 -1.5 0.0 21 44 386 409 382 412 0.74 7 7 0.00053 0.27 11.3 0.2 21 52 414 445 405 447 0.90
Sequence Information
- Coding Sequence
- ATGGATCCGTTAAGAACCCCTATTGATGATTGCGGGATAAATTCCAAAGTATTGTCAATCCCACTTATTAGATGCGATGAACAATTAGTAttcaataaaatgattaaagaggaaaatattaattgtcaagtctttaaaagaattattaaaaaggaAATTATTGATGATCatgtatttaatgaaattaaagagGAAATTATTGATGAAACAGACCATCGTAATGAtagtcaattattaaaaaaaagttCTAGTGTGGTGCCATTTTCACTTAATGTAATATGTGGTGGTCaagaatttaatgaaaaaattaaacaggAAAACATTGATTGTCAAGTACTTAATGGAATTATTAAAGGGAAAATGATTGATGATCAAGTACTTAATGGAAGTATTAAAGAGGGAATTATTAATGatcaagtatttaatacaattattaaagagGAAATTATAGATGAAACTGACCATCCTAATAATGGTCAATTATTACAAGAAAgaactaaaACTGAAAAAGAAAACCCAATTAAAACCGAAATAAAAGctgaaatagattttattaacaGTTGTGAATTTGAAggaacaatttttaacaaaagcAACTCTTCAGATTTCATTACTTCATCCAATTTAACTATACCTACAAGGACACATACCGGAAAAAAGCTGCTTGAATGTGATTTCTGTGATTTCAAGTTTTCTAAATCATCAACTTTAATTGAGCATACAAGGACTCACACCGGAGAAAAGCCGTATAAGTGTCATATCTGTGATGCAAAGTTTGTTAGATCAACACATTTAACAAGACATATAAAGATACATCCTGGAGAAATGCCATATAAGTGTGATGTATGTGATACTGGGTTTCATCAAGCACATCATTTAAAAACTCATAAATGGACACACATCGAAGGAAAGCCATACAAATGTAATATCTGTGATGCAGGGTTTACCAAATCATCACATTTAACTAGGCATACAAGGACACATACCGGTGAAAAGCCATATATATGTGATACCTGTAATGCAGGGTTTACTAGAGCATCGCATTTAACCGTGCATATTAGGACACATACCAAAGAAAAGCCATATGAATGTGATATCTGTTTTACAGGATTTACTCAAGAATACCATTTAACAAGACATACCCAAACACATACCGGCGAAAAACCATTCAAGTGTGATGTATGTGATAAATGGTTTTCTTcaaaatggtatttaaaaacGCATTTAAGGACACACACCGGCGAAAAGCCGCATAAATGTGATATATGTGAACAAGAATTTTCTCagctatcaaatttaaaaacccATAGAAAGAAAAGACACATGCCGAAGAAAACcgtataa
- Protein Sequence
- MDPLRTPIDDCGINSKVLSIPLIRCDEQLVFNKMIKEENINCQVFKRIIKKEIIDDHVFNEIKEEIIDETDHRNDSQLLKKSSSVVPFSLNVICGGQEFNEKIKQENIDCQVLNGIIKGKMIDDQVLNGSIKEGIINDQVFNTIIKEEIIDETDHPNNGQLLQERTKTEKENPIKTEIKAEIDFINSCEFEGTIFNKSNSSDFITSSNLTIPTRTHTGKKLLECDFCDFKFSKSSTLIEHTRTHTGEKPYKCHICDAKFVRSTHLTRHIKIHPGEMPYKCDVCDTGFHQAHHLKTHKWTHIEGKPYKCNICDAGFTKSSHLTRHTRTHTGEKPYICDTCNAGFTRASHLTVHIRTHTKEKPYECDICFTGFTQEYHLTRHTQTHTGEKPFKCDVCDKWFSSKWYLKTHLRTHTGEKPHKCDICEQEFSQLSNLKTHRKKRHMPKKTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019612;
- 90% Identity
- iTF_00019612;
- 80% Identity
- iTF_00019612;