Apis000362.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:55757139-55758772[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 6.7 6.8 0.0 21 43 18 40 7 45 0.85 2 12 0.094 48 4.1 0.0 20 44 45 69 40 79 0.82 3 12 3 1.5e+03 -0.7 0.1 21 34 102 115 96 128 0.74 4 12 0.14 73 3.5 0.0 20 47 129 156 122 162 0.82 5 12 1.9 9.6e+02 -0.1 0.1 21 41 158 178 151 185 0.75 6 12 0.36 1.8e+02 2.2 0.0 20 44 185 209 179 219 0.81 7 12 1.9 9.6e+02 -0.1 0.1 20 40 213 233 206 241 0.72 8 12 0.09 46 4.2 0.1 21 44 242 265 234 275 0.85 9 12 2.3 1.2e+03 -0.4 0.1 20 32 269 281 262 303 0.73 10 12 2 1e+03 -0.2 0.1 21 42 298 319 288 325 0.78 11 12 0.00091 0.47 10.5 0.1 20 44 325 349 315 353 0.85 12 12 0.0012 0.63 10.1 0.1 21 43 354 376 350 381 0.92
Sequence Information
- Coding Sequence
- ATGTCGTTCGCTGTAAGGGGCAGTTTGAAGGAACACAAGCGAGTGCACACCGGTGAAAAACCATAcgcatgcgatgtatgcgacaaaTCATTCAGCCAAAGCAGCAATTTGACGGGgcatcgacgcacacacactggagaaaaaccatacgcgtgcgatgtatgcgacaagtcTTTCGGCCAACCTAACAATTTGACGACACATCGACGAACGCACACTGGAGGAAAACCATTcgcgtgcgatgtatgcgacaagtcaTTTAGTGAAAACGGCAGTTTGACGGTACACAAGCGAatgcacactggagaaaaaccatACGCGTGCGAcgtatgcgacaagtcgttctctGTAAGTGACAGTTTGACGATACACCGACGCACTCACACCGGTGAAAAACCAtacgcgtgcgatgtatgcgacaagtcaTTTAGTGAAAACGGCAATTTGACGAAACACAAACGAATCCATACCGGCGAAAAACCATACGCATGCGATGTATGTGACAAGTCTTTCAGCCTAAGTCACCATTTGATGACACATCGACGAAcgcacactggtgaaaaaccgtacgcatgtgatgtatgcgacaagtcaTTCAGTGAAAGTGGCAGTTTGACGAAGCACCAACGCAcgcacactggtgaaaaaccgtacgcatgcgatgtatgcgacaagtcgttctctATAAGTAGCGGTTTGACGACACATAAGCGAATCCACACCGGTGAAAAACCATAcgcatgcgatgtatgcgacaagtcTTTCAGCCAACCTAACAATTTGACGACACATCGACGAacgcacactggagaaaaaccattcgcgtgcgatgtatgcgacaagtcaTTTAGTGAAAACGGCAGTTTGACGGTACACAAGCGAatgcacactggagaaaaaccatACGCTTGCGACGTATGCGACATGTCGTTCAGTGAAAGTGGCAGTTTTACGAAGCACCAACGCACGCACACTGGTGAACAACCGTACGCATGTGATGTATGCGACAAATCATTCAGCCAAAGCAGCAATTTGACGACACATAAGCGAATCCACACCGGTGAAAAACCATAcgcatgcgatgtatgcgacaaaTCATTCAGCCAAAGCAGCAATCTGACGAGgcatcgacgcacacacactggagaaaaatTGTACGCGTGTGATGTACCTATGTAA
- Protein Sequence
- MSFAVRGSLKEHKRVHTGEKPYACDVCDKSFSQSSNLTGHRRTHTGEKPYACDVCDKSFGQPNNLTTHRRTHTGGKPFACDVCDKSFSENGSLTVHKRMHTGEKPYACDVCDKSFSVSDSLTIHRRTHTGEKPYACDVCDKSFSENGNLTKHKRIHTGEKPYACDVCDKSFSLSHHLMTHRRTHTGEKPYACDVCDKSFSESGSLTKHQRTHTGEKPYACDVCDKSFSISSGLTTHKRIHTGEKPYACDVCDKSFSQPNNLTTHRRTHTGEKPFACDVCDKSFSENGSLTVHKRMHTGEKPYACDVCDMSFSESGSFTKHQRTHTGEQPYACDVCDKSFSQSSNLTTHKRIHTGEKPYACDVCDKSFSQSSNLTRHRRTHTGEKLYACDVPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019506;
- 90% Identity
- iTF_00019506;
- 80% Identity
- iTF_00019506;