Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: -
Assembly: GCA_005508785.1
Location: NC:42132927-42134842[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.014 7.2 6.7 0.2 27 47 43 63 35 70 0.84

2 16 1.9 9.6e+02 -0.1 0.2 21 43 65 87 59 92 0.80

3 16 0.0085 4.3 7.4 0.0 20 45 92 117 83 126 0.82

4 16 2.1 1.1e+03 -0.2 0.1 20 43 120 143 116 152 0.78

5 16 1.6 8.1e+02 0.2 0.1 20 31 148 159 141 180 0.81

6 16 5.8 3e+03 -1.6 0.1 21 33 177 189 169 204 0.73

7 16 0.35 1.8e+02 2.3 0.1 19 43 203 227 192 236 0.77

8 16 0.39 2e+02 2.1 0.1 20 43 232 255 222 259 0.79

9 16 0.013 6.6 6.9 0.1 20 43 260 283 251 288 0.86

10 16 0.014 7.1 6.8 0.1 21 44 289 312 284 320 0.85

11 16 0.63 3.2e+02 1.5 0.0 21 43 317 339 312 350 0.78

12 16 0.54 2.8e+02 1.7 0.0 20 43 372 395 360 404 0.79

13 16 0.42 2.1e+02 2.0 0.1 20 43 400 423 392 427 0.78

14 16 0.1 51 4.0 0.0 20 46 428 454 421 460 0.81

15 16 0.0041 2.1 8.4 0.0 20 44 456 480 446 488 0.84

16 16 0.28 1.4e+02 2.6 0.0 21 44 485 508 480 514 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.014	7.2	6.7	0.2	27	47	43	63	35	70	0.84
2	16	1.9	9.6e+02	-0.1	0.2	21	43	65	87	59	92	0.80
3	16	0.0085	4.3	7.4	0.0	20	45	92	117	83	126	0.82
4	16	2.1	1.1e+03	-0.2	0.1	20	43	120	143	116	152	0.78
5	16	1.6	8.1e+02	0.2	0.1	20	31	148	159	141	180	0.81
6	16	5.8	3e+03	-1.6	0.1	21	33	177	189	169	204	0.73
7	16	0.35	1.8e+02	2.3	0.1	19	43	203	227	192	236	0.77
8	16	0.39	2e+02	2.1	0.1	20	43	232	255	222	259	0.79
9	16	0.013	6.6	6.9	0.1	20	43	260	283	251	288	0.86
10	16	0.014	7.1	6.8	0.1	21	44	289	312	284	320	0.85
11	16	0.63	3.2e+02	1.5	0.0	21	43	317	339	312	350	0.78
12	16	0.54	2.8e+02	1.7	0.0	20	43	372	395	360	404	0.79
13	16	0.42	2.1e+02	2.0	0.1	20	43	400	423	392	427	0.78
14	16	0.1	51	4.0	0.0	20	46	428	454	421	460	0.81
15	16	0.0041	2.1	8.4	0.0	20	44	456	480	446	488	0.84
16	16	0.28	1.4e+02	2.6	0.0	21	44	485	508	480	514	0.87

Sequence Information

Coding Sequence: ATGAATGGCCTCACTGCTTGTCCTGGCAAGAGAAAGTACTCGTGTGATGTTTGCAATAAATGCTTTACTTATAGAAGCAGCTTAATTACACACCAGCAGACGCATGAGAAGAACAAACTTTACCCGTGTGACGTCTGCTACAAGTCGTTCAGTCAAAGTTGCAATTTGACAACACATCGACGGATAcacacaggagagaaaccatacgcctgcgatgtatgcgacaagtcgtttgCTGAAAGTAGTTCACTGACGAGTCATCGACGGACCCACACGGGCGAGAAACCAtacgcgtgcgatgtatgcgacatgTCTTTCAGTCAAAGTGGCAATTTGACAACACATCGACGGACCCACAAGGGTGATAAACCAtacgcgtgcgatgtatgcgacatgTCTTTCAGCCAAAGTGGCTCATTTACGTGTCATCGACGGACccacacaggagagaaaccatTTGCTTGCGATATATGTGACAAGtcatttgttaaaatgtatacattgatGAGTCATCAACGGACCCACACGGGTGAGAAACCATACATATGCGATGTATGCGATAAATCATTTGCTAAAATGTGTACATTGAAAACACATCGTCGGACCCACACGGGCGAGAAACCAtacgcgtgcgatgtatgcgacatgTCTTTCAGCCAAAGTGGCTCATTTACGAGTCATCGACGGACccacacaggagagaaaccatTTGCTTGCGATATATGTGACAAGTCGTTTGCTGAAAGTAGTTCATTGACGAGTCATCGACGGACccacacaggagagaaaccatttgcgtgcgatgtatgcgacatgTCTTTCAGTCAAAGTTGCAATTTGACAACACATCGACGGACccacacaggagagaaaccatttgcgtgcgatgtatgcgacatgTCTTTCAGTCAAAGTTGCAATTTGACAACACATCGACGGACccacacaggagagaaaccatTTGGTTGCGATATATGTGACAAGTCGTTTGCTGAAAGTAGTTCATTGACGAGTCATCGACGGACCCACACGGGTGTGAAACCAtacgcgtgcgatgtatgcgacatgTCGTTTGCTGAAAGTGGGACATTGACGAGTCATCGACGTATccacacaggagagaaaccatttgcgtgcgatgtatgcgacatgTCTTTCAGCCAAAGTGGCTCATTTACGAGTCATCGACGGACccacacaggagagaaaccatTTGCTTGCGATATATGTGACAAGTCGTTTGCTGAAAGTAGTTCATTGACGAGTCATCGACGGACCCACACGGGTGAGAAACCAtacgcgtgcgatgtatgcgacatgTCGTTCAGTCAAAGTGGGACATTGACGAGTCATCGACGTATCCACACGGGTGAGAAACCATTTGCGTGTGATATATGTGATAAATCATTCAGTCAAAGTTGCAATTTGACAACACATCAACGGACCCACATGGGTGAGAAACCATACATATGCGATGTATGTGATAAATCTTTCAATCAAAGTGGCTCATTGACAAGTCATCGACAAATCCACACGTCCGAGAATCCGTAA
Protein Sequence: MNGLTACPGKRKYSCDVCNKCFTYRSSLITHQQTHEKNKLYPCDVCYKSFSQSCNLTTHRRIHTGEKPYACDVCDKSFAESSSLTSHRRTHTGEKPYACDVCDMSFSQSGNLTTHRRTHKGDKPYACDVCDMSFSQSGSFTCHRRTHTGEKPFACDICDKSFVKMYTLMSHQRTHTGEKPYICDVCDKSFAKMCTLKTHRRTHTGEKPYACDVCDMSFSQSGSFTSHRRTHTGEKPFACDICDKSFAESSSLTSHRRTHTGEKPFACDVCDMSFSQSCNLTTHRRTHTGEKPFACDVCDMSFSQSCNLTTHRRTHTGEKPFGCDICDKSFAESSSLTSHRRTHTGVKPYACDVCDMSFAESGTLTSHRRIHTGEKPFACDVCDMSFSQSGSFTSHRRTHTGEKPFACDICDKSFAESSSLTSHRRTHTGEKPYACDVCDMSFSQSGTLTSHRRIHTGEKPFACDICDKSFSQSCNLTTHQRTHMGEKPYICDVCDKSFNQSGSLTSHRQIHTSENP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019490;
90% Identity: iTF_00019490;
80% Identity: iTF_00019490;