Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: ZSCAN16
Assembly: GCA_005508785.1
Location: NC:119891862-119893693[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.32 1.6e+02 2.4 0.0 20 44 29 53 22 62 0.84

2 17 0.57 2.9e+02 1.6 0.0 20 44 57 81 51 90 0.81

3 17 0.14 71 3.6 0.0 20 43 85 108 73 113 0.84

4 17 0.096 49 4.1 0.1 20 44 113 137 107 145 0.84

5 17 0.64 3.3e+02 1.4 0.0 21 46 142 167 137 175 0.81

6 17 2.2 1.1e+03 -0.3 0.0 20 43 169 192 161 197 0.83

7 17 0.11 58 3.8 0.0 20 46 197 223 187 229 0.80

8 17 0.0031 1.6 8.8 0.0 21 45 226 250 220 259 0.85

9 17 0.63 3.2e+02 1.4 0.0 21 43 254 276 249 280 0.86

10 17 0.058 29 4.8 0.0 20 44 309 333 298 342 0.83

11 17 0.46 2.3e+02 1.9 0.1 15 45 332 362 330 370 0.76

12 17 0.31 1.6e+02 2.4 0.0 20 44 365 389 358 399 0.84

13 17 4.2 2.2e+03 -1.2 0.1 20 31 393 404 386 418 0.76

14 17 0.19 96 3.1 0.0 20 44 421 445 411 453 0.82

15 17 0.082 42 4.3 0.1 20 44 449 473 442 483 0.83

16 17 0.66 3.4e+02 1.4 0.0 21 43 478 500 473 504 0.86

17 17 0.031 16 5.6 0.0 21 44 506 529 496 535 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.32	1.6e+02	2.4	0.0	20	44	29	53	22	62	0.84
2	17	0.57	2.9e+02	1.6	0.0	20	44	57	81	51	90	0.81
3	17	0.14	71	3.6	0.0	20	43	85	108	73	113	0.84
4	17	0.096	49	4.1	0.1	20	44	113	137	107	145	0.84
5	17	0.64	3.3e+02	1.4	0.0	21	46	142	167	137	175	0.81
6	17	2.2	1.1e+03	-0.3	0.0	20	43	169	192	161	197	0.83
7	17	0.11	58	3.8	0.0	20	46	197	223	187	229	0.80
8	17	0.0031	1.6	8.8	0.0	21	45	226	250	220	259	0.85
9	17	0.63	3.2e+02	1.4	0.0	21	43	254	276	249	280	0.86
10	17	0.058	29	4.8	0.0	20	44	309	333	298	342	0.83
11	17	0.46	2.3e+02	1.9	0.1	15	45	332	362	330	370	0.76
12	17	0.31	1.6e+02	2.4	0.0	20	44	365	389	358	399	0.84
13	17	4.2	2.2e+03	-1.2	0.1	20	31	393	404	386	418	0.76
14	17	0.19	96	3.1	0.0	20	44	421	445	411	453	0.82
15	17	0.082	42	4.3	0.1	20	44	449	473	442	483	0.83
16	17	0.66	3.4e+02	1.4	0.0	21	43	478	500	473	504	0.86
17	17	0.031	16	5.6	0.0	21	44	506	529	496	535	0.79

Sequence Information

Coding Sequence: ATGGAGAAGACACTTTATCAGTGCGATGTCTGTAACAAGTCGTTCTCTAAAAGTACCGATTTGACGATACATCGACGCatgcacactggagaaaaaccgttccCTTGTGATGTATGTGAAAAGTCGTTCTCTAAAAGTGGTAATTTGACAGcacatcgacgcacacacactggagaaaaaccgtacgcttgtgatgtatgcgaaaagtcgtTTTCTGAAAGTGGTAGTTTGACGAAACACAAGCGGACTCACACcggagaaaaaccgtacgcgtgtgatgtatgcgaaaagtcgtTTTCTACAAGTAGCAATTTGACAAcacatcgacgcacacacactggagAAAAGCCGTACGCTTGCGATGTATGCGAGAAGTCGTTCTCCGAAAGTAGCCATTTGACGAGACACAAGCGGACTCACACTGGAGAAAAGCCGTACGCTTGCGATGTATGCGAGAAGTTGTTCTCCGCAAGTACCGATTTGACGATACATCGACGCatgcacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTTTCTGAAAGTGGTAGTTTGACGAAACACAAGCGGACTCACACcggagaaaaaccgtacgcgtgtgatgtatgcgaaaagtcgtTCTCTACAAGTAGCAATTTGACGATACATCGACGCatgcacactggagaaaaacccttcccttgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACGAGACACAAGCGGActcacactggagaaaaaccgtacgcgtgtgATGTATGTGAAAATTCATTCTCCGAAAGTAGCCATTTGACGAAACACAAGCGGACTCACACTGGAGAAAACTTGTACGGGTGCGATGTATGTGAAAAGTCGTTCTCTGAAAGTGGCAGTTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCTCAAAGTGGCACTTTGACGAAacatcgacgcacgcacactggAGAAAAGCCGTACGCTTGCGATGTATGCGAGAAGTCGTTCTCCACAAGTACCGATTTGACGATACATCGACGCatgcacactggagaaaaaccgttccCTTGTGATGTATGTGAAAAGTCGTTCTCTAAAAGTGGCAATTTGACAGcacatcgacgcacacacactggagaaaaaccgtacgcttgtgatgtatgcgaaaagtcgtTTTCTGAAATTGGTAGTTTGACGAAACACAAGCGGACTCACACCGGAGAAAAACCGTACAAgtgtgatgtatgcgaaaagtcgtTCTCTACAAGTAGCAATTTGACAAcacatcgacgcacacacactggagAAAAGCCGTACGCTTGCGATGTATGCGAGAAGTCGTTCTCCGAAAGTAGCCATTTGACGAGACACAAGCGGActcacactggagaaaaaccgtacgcgtgtgATGTATGTGAAAATTCATTCTCCGAAAGTAGCCATTTGACGAAACACAAGCGGTCTCACACTGGAGAAAACTTGTACGGGTGCGATGTATGTGAAAAGTCGTTCTCTCAAAGTGGCAATTTGACAAGACATAAGCGTACGCACATGGCACACTGA
Protein Sequence: MEKTLYQCDVCNKSFSKSTDLTIHRRMHTGEKPFPCDVCEKSFSKSGNLTAHRRTHTGEKPYACDVCEKSFSESGSLTKHKRTHTGEKPYACDVCEKSFSTSSNLTTHRRTHTGEKPYACDVCEKSFSESSHLTRHKRTHTGEKPYACDVCEKLFSASTDLTIHRRMHTGEKPFPCDVCEKSFSESGSLTKHKRTHTGEKPYACDVCEKSFSTSSNLTIHRRMHTGEKPFPCDVCEKSFSQSGNLTRHKRTHTGEKPYACDVCENSFSESSHLTKHKRTHTGENLYGCDVCEKSFSESGSLTKHKRTHTGEKPYACDVCEKSFSQSGTLTKHRRTHTGEKPYACDVCEKSFSTSTDLTIHRRMHTGEKPFPCDVCEKSFSKSGNLTAHRRTHTGEKPYACDVCEKSFSEIGSLTKHKRTHTGEKPYKCDVCEKSFSTSSNLTTHRRTHTGEKPYACDVCEKSFSESSHLTRHKRTHTGEKPYACDVCENSFSESSHLTKHKRSHTGENLYGCDVCEKSFSQSGNLTRHKRTHMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019479;
90% Identity: iTF_00019479;
80% Identity: iTF_00019479;