Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: mnm-2
Assembly: GCA_005508785.1
Location: NC:42342014-42343778[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.94 4.8e+02 0.9 0.1 26 44 14 32 10 42 0.83

2 18 0.16 82 3.3 0.1 20 43 36 59 29 68 0.83

3 18 0.11 55 3.9 0.2 20 44 64 88 59 96 0.84

4 18 0.0087 4.4 7.4 0.1 11 43 82 115 79 124 0.75

5 18 0.12 61 3.8 0.1 20 43 120 143 113 147 0.85

6 18 0.00072 0.37 10.9 0.1 11 44 138 172 135 180 0.79

7 18 0.21 1.1e+02 3.0 0.1 21 43 177 199 172 208 0.84

8 18 0.12 63 3.7 0.2 20 43 204 227 197 231 0.85

9 18 0.0064 3.3 7.8 0.1 11 44 222 256 215 266 0.78

10 18 1.7 8.5e+02 0.1 0.1 20 43 260 283 255 287 0.77

11 18 0.019 9.7 6.3 0.0 19 43 287 311 275 316 0.83

12 18 0.032 16 5.6 0.1 15 44 311 340 309 350 0.83

13 18 0.55 2.8e+02 1.6 0.1 16 43 367 395 359 404 0.73

14 18 0.33 1.7e+02 2.4 0.1 21 44 401 424 393 432 0.84

15 18 0.084 43 4.3 0.0 11 43 418 451 411 456 0.79

16 18 0.01 5.1 7.2 0.0 14 45 450 481 444 490 0.82

17 18 0.34 1.7e+02 2.3 0.1 20 52 484 516 479 518 0.81

18 18 0.85 4.3e+02 1.0 0.1 20 44 512 536 494 544 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.94	4.8e+02	0.9	0.1	26	44	14	32	10	42	0.83
2	18	0.16	82	3.3	0.1	20	43	36	59	29	68	0.83
3	18	0.11	55	3.9	0.2	20	44	64	88	59	96	0.84
4	18	0.0087	4.4	7.4	0.1	11	43	82	115	79	124	0.75
5	18	0.12	61	3.8	0.1	20	43	120	143	113	147	0.85
6	18	0.00072	0.37	10.9	0.1	11	44	138	172	135	180	0.79
7	18	0.21	1.1e+02	3.0	0.1	21	43	177	199	172	208	0.84
8	18	0.12	63	3.7	0.2	20	43	204	227	197	231	0.85
9	18	0.0064	3.3	7.8	0.1	11	44	222	256	215	266	0.78
10	18	1.7	8.5e+02	0.1	0.1	20	43	260	283	255	287	0.77
11	18	0.019	9.7	6.3	0.0	19	43	287	311	275	316	0.83
12	18	0.032	16	5.6	0.1	15	44	311	340	309	350	0.83
13	18	0.55	2.8e+02	1.6	0.1	16	43	367	395	359	404	0.73
14	18	0.33	1.7e+02	2.4	0.1	21	44	401	424	393	432	0.84
15	18	0.084	43	4.3	0.0	11	43	418	451	411	456	0.79
16	18	0.01	5.1	7.2	0.0	14	45	450	481	444	490	0.82
17	18	0.34	1.7e+02	2.3	0.1	20	52	484	516	479	518	0.81
18	18	0.85	4.3e+02	1.0	0.1	20	44	512	536	494	544	0.78

Sequence Information

Coding Sequence: ATGAATAACCTAACTGGTTTTCCTGGTAAAAGAAAGAACTTGTGTGATGTTTGCGACAAGTCGTTCAGTCAAAGTTGCAATTTGACAACACATCGACGGACCCACACAGGTGAGAAACCATACATATGCGATGTATGCAACATGTCATTCAGTCAAAGTGGCTCATTGACGAGTCATCGACGGACTcacacaggagagaaaccatACGCGTGTGATATATGTGAAAAATCGTTCAGTGATAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatTTACGTGCGATATATGTGAAAAGTCGTTTGCTGAAAGTAGTTCATTGACGAGTCATCGACGGACTcacacaggagagaaaccatACGCGTGTGATATATGTGAAAAATCGTTCAGTGATAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatTTGCGTGCGATATATGTGATAAATCTTTCAGTCAGAGTTGCAATTTGACAACACACCGACGTACccacacaggagagaaaccatACATATGCGATGTATGCAACATGTCATTCAGTCAAAGTGGCTCATTGACGAGTCATCGACGGACTcacacaggagagaaaccatACGCGTGTGATATATGTGAAAAATCGTTCAGTGATAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatTTGCGTGCGATATATGTGACATGTCGTTTAGTCAAAGTTGCCATTTGACAACACATCGACGGACCCACACAGGTGAGAAACCATATgcgtgtgatgtatgcgaaaaaTCATTCAGTAAAAGTGGCACATTGACGAGTCATCGACGGACCCATACAGGAGAAAAACCATAcgcgtgtgatgtatgcgacATGTCTTTCAGTCAAAGTGGCTCATTGAAGAAACATCGACGTACccacacaggagagaaaccatTTGAGTGCGATATATGTGACAAGTCGTTTGCTGAAAGTAGTTCATTGACGAGACATCGACGGACCCATACAGGAGATAAACCATACGCATGTGATGTATGCGAAATGTCTTTCAGTAAAAATGGCACATTGACGAGTCATCGACGGTCTcacacaggagagaaaccatACATTTGTGATGTATGTGATAAATCATTCAGTGAAAGTGGCAAATTGACTACACATCAACGGACCCACACGGGTGAGAAACCATATGCGTGTGATGTATGTGAAAAATCATTCAGTGAAAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatatgcgtgtgatgtatgcgaaaaaTCATTCAGTGGAAGTGACACATTGAAGAAACATCGACGTACccacacaggagagaaaccatTTGCGTGCGATATATGTGACAAGTCGTTTGCTGAAAGTAGTTCATTGACGAGACATCGACGGACCCACACGGGCGAGAAACCATACATTTGTGATGTATGTGATAAATCATTCAGTAAAAGTGGATCATTGAAGAGTCATCGACGTATCCATACAGGAGAAAAACCATACGTGTGCGATGTATGTGACATGTCGTTTGCTGAAAGTAGTTCATTGACGAGTCATCGACGGACCCACACGGCCCAGAAACCATAA
Protein Sequence: MNNLTGFPGKRKNLCDVCDKSFSQSCNLTTHRRTHTGEKPYICDVCNMSFSQSGSLTSHRRTHTGEKPYACDICEKSFSDSGTLKKHRRTHTGEKPFTCDICEKSFAESSSLTSHRRTHTGEKPYACDICEKSFSDSGTLKKHRRTHTGEKPFACDICDKSFSQSCNLTTHRRTHTGEKPYICDVCNMSFSQSGSLTSHRRTHTGEKPYACDICEKSFSDSGTLKKHRRTHTGEKPFACDICDMSFSQSCHLTTHRRTHTGEKPYACDVCEKSFSKSGTLTSHRRTHTGEKPYACDVCDMSFSQSGSLKKHRRTHTGEKPFECDICDKSFAESSSLTRHRRTHTGDKPYACDVCEMSFSKNGTLTSHRRSHTGEKPYICDVCDKSFSESGKLTTHQRTHTGEKPYACDVCEKSFSESGTLKKHRRTHTGEKPYACDVCEKSFSGSDTLKKHRRTHTGEKPFACDICDKSFAESSSLTRHRRTHTGEKPYICDVCDKSFSKSGSLKSHRRIHTGEKPYVCDVCDMSFAESSSLTSHRRTHTAQKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019477;
90% Identity: iTF_00019477;
80% Identity: iTF_00019477;