Apis001923.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- Znf296_4
- Assembly
- GCA_005508785.1
- Location
- NC:120077040-120078551[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.036 19 5.4 0.0 20 44 29 53 19 61 0.86 2 15 0.21 1.1e+02 3.0 0.0 21 43 58 80 53 84 0.87 3 15 0.034 18 5.5 0.0 20 45 85 110 80 119 0.83 4 15 0.52 2.7e+02 1.7 0.0 21 44 114 137 109 145 0.84 5 15 0.004 2 8.5 0.0 20 44 141 165 134 174 0.83 6 15 2.2 1.1e+03 -0.3 0.1 21 43 170 192 165 198 0.76 7 15 0.038 19 5.4 0.1 20 44 197 221 184 229 0.85 8 15 0.065 33 4.6 0.0 20 47 225 252 217 258 0.80 9 15 0.22 1.1e+02 2.9 0.0 21 47 254 280 249 286 0.83 10 15 0.92 4.7e+02 0.9 0.0 21 43 282 304 274 308 0.85 11 15 0.067 34 4.6 0.1 20 44 309 333 299 342 0.83 12 15 0.73 3.7e+02 1.2 0.0 21 45 338 362 333 369 0.81 13 15 0.12 60 3.8 0.0 21 46 366 391 360 397 0.83 14 15 0.055 28 4.8 0.0 21 43 394 416 388 420 0.87 15 15 0.23 1.2e+02 2.9 0.0 20 44 421 445 416 451 0.83
Sequence Information
- Coding Sequence
- ATGGAGAAGAAACTTAATCAGTGCGATGTCtgcgacaagtcgttctctGAAAGTACCAATTTGACGATACATCGACGCatgcacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACAGcacatcgacgcacacacactggtgaaaaaccgttCCTTTGTGATGTCtgcgacaagtcgttctctAAAAGTACCAATTTGACAACgcatcgacgcacgcacactggtgaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCCGAAAGTGGCAATTTGACGAAACACAAGCAGActcacactggagaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCCGAAAGTAGCCATTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgcgtgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgcgtgcgatgtatgcgagAAGTCGTTCCCCACAAGTACCGATTTGACGATACATCGACGCatgcacactggagaaaaaccgtacgcgtgtgATGTATGTGAAAAGTCGTTCTCTCAAAGTAGCCATTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCCGAAAGTAGCAATTTGACGATACATCGACGCatgcacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTCTCTAAAAGTGGCAATTTGACAGTACATCAACGCatgcacactggagaaaaaccgtacgcgtgtgATGTATGTGAAAAGTCGTTCTCTGAAAGTGGCAGTTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCCGAAAGTAGCCATTTGACGAGACATAAGCGGACTCACATTGGAGAAAAGCCGTACGCTTGCGATGTATGCGAGAAGTTGTTCTCCGCAAGTACCGATTTGACGATACATCGACGCatgcacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTCTCTAAAAGTAGCAATTTGACAGCACATCGACGCatgcacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACAGcacatcgacgcacacacactggagaaaaaccgtacgcgtgcgaTGTTTGCGATAAGTCGTTCTCTGAAAGTGGCACTTTGATAAGACATAAGCGTACACACATGGCACACTGA
- Protein Sequence
- MEKKLNQCDVCDKSFSESTNLTIHRRMHTGEKPFPCDVCEKSFSQSGNLTAHRRTHTGEKPFLCDVCDKSFSKSTNLTTHRRTHTGEKPYACDVCEKSFSESGNLTKHKQTHTGEKPYACDVCEKSFSESSHLTKHKRTHTGEKPYACDVCEKSFSQSGNLTKHKRTHTGEKPYACDVCEKSFPTSTDLTIHRRMHTGEKPYACDVCEKSFSQSSHLTKHKRTHTGEKPYACDVCEKSFSESSNLTIHRRMHTGEKPFPCDVCEKSFSKSGNLTVHQRMHTGEKPYACDVCEKSFSESGSLTKHKRTHTGEKPYACDVCEKSFSESSHLTRHKRTHIGEKPYACDVCEKLFSASTDLTIHRRMHTGEKPFPCDVCEKSFSKSSNLTAHRRMHTGEKPFPCDVCEKSFSQSGNLTAHRRTHTGEKPYACDVCDKSFSESGTLIRHKRTHMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019488;
- 90% Identity
- iTF_00019488;
- 80% Identity
- iTF_00019488;