Apis001466.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:107277859-107279413[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.28 1.4e+02 2.6 0.0 20 43 29 52 22 57 0.79 2 12 0.098 50 4.0 0.1 20 43 57 80 49 85 0.84 3 12 0.054 27 4.9 0.0 21 43 86 108 78 113 0.85 4 12 0.0034 1.8 8.7 0.0 21 43 114 136 109 140 0.90 5 12 0.001 0.52 10.4 0.0 21 44 142 165 136 173 0.86 6 12 0.41 2.1e+02 2.0 0.1 21 43 170 192 165 196 0.80 7 12 0.033 17 5.6 0.0 20 44 197 221 189 229 0.82 8 12 0.4 2e+02 2.1 0.1 21 43 226 248 221 253 0.80 9 12 0.045 23 5.1 0.0 20 44 253 277 244 285 0.82 10 12 0.44 2.2e+02 2.0 0.2 21 43 282 304 275 309 0.79 11 12 0.0032 1.6 8.8 0.0 19 43 308 332 302 336 0.87 12 12 0.3 1.5e+02 2.5 0.1 21 42 338 362 332 372 0.67
Sequence Information
- Coding Sequence
- ATGGAGAAGAACTCTTACCTGTGTGACGTATGTGACAAGTCATTCAGCCAAATTGGAAATTTGATGATACATCGACGTACgcacactggcgaaaaaccTTACGCATGCGAtatatgcgacaagtcgtttgCTGTAAGTGACAGTTTAACGAAACAcaaacgcacacacactggtgaaaaaccgtacgcatgcgatgtatgcgacaaaTCTTTCTCTCAAAGTTGCAGTTTAACGAACCATAAACGCACacacactggcgaaaaaccTTATGCATGCGAtatatgcgacaagtcgttcgctataagtaataatttaacgaACCACCAACGAACacacactggcgaaaaaccgtacgcaTGCGATATATGCGACAAATCTTTCTCTCAAAGTAGCAATTTAACGAACCACCAACGAACacacactggcgaaaaaccgtacgcaTGCGATATATGCGACAAATCTTTCTCTCAAAGTAGCAATTTAACGAAACACCAACGAACacacactggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgtttgCTGTAAGTGACAGTTTAACGAAACACAAACGCACACACACAGGAGAAAAACCTTACGCATGCGAtatatgcgacaagtcgttcgctataagtaataatttaacgaACCACCAACGAACacacactggcgaaaaaccgtacgcatgcgatatatgcgacaagtcgtttgCTGTAAGTGACAGTTTAACGAAACACAAACGCACACACACAGGAGAAAAACCTTACGCATGTGAtatatgcgacaagtcgttcagTGAAAATACCAATTTGACAAAGCATCAACGCACACACACAggtgaaaaaccgtacgcatgcgatatatgcgacaagtcgttctctACGAGTAGCAGTTTGACGACACATCGACGTACGCATATTAGCGAAAAACCATATGtatgcgatgtatgcgacaaaTCTTTCTCTCAAAGTGGCAATTTAACGAACCAcaaacgcacacacactggcgaaaaaccTTACGCATGCGAtatatgcgacaagtcgttcgCTGTAAGTGGCAGTTTGACGAACCATCGACGTACGCACACTGTTAAAATGGAGCTCAGAACTTCTCTATAA
- Protein Sequence
- MEKNSYLCDVCDKSFSQIGNLMIHRRTHTGEKPYACDICDKSFAVSDSLTKHKRTHTGEKPYACDVCDKSFSQSCSLTNHKRTHTGEKPYACDICDKSFAISNNLTNHQRTHTGEKPYACDICDKSFSQSSNLTNHQRTHTGEKPYACDICDKSFSQSSNLTKHQRTHTGEKPYACDICDKSFAVSDSLTKHKRTHTGEKPYACDICDKSFAISNNLTNHQRTHTGEKPYACDICDKSFAVSDSLTKHKRTHTGEKPYACDICDKSFSENTNLTKHQRTHTGEKPYACDICDKSFSTSSSLTTHRRTHISEKPYVCDVCDKSFSQSGNLTNHKRTHTGEKPYACDICDKSFAVSGSLTNHRRTHTVKMELRTSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019497;
- 90% Identity
- iTF_00019497;
- 80% Identity
- iTF_00019497;