Apis003777.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- mnm-2
- Assembly
- GCA_005508785.1
- Location
- NC:42377386-42379931[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.0067 3.4 7.8 0.0 20 44 36 60 28 69 0.84 2 25 1.9 9.8e+02 -0.1 0.1 21 43 65 87 60 92 0.84 3 25 0.0014 0.69 10.0 0.1 11 44 82 116 75 126 0.80 4 25 1.7 8.6e+02 0.1 0.1 20 43 120 143 115 153 0.79 5 25 3.7 1.9e+03 -1.0 0.1 19 31 147 159 135 173 0.74 6 25 0.14 70 3.6 0.1 19 43 175 199 163 204 0.81 7 25 0.097 49 4.1 0.0 16 45 201 229 194 238 0.80 8 25 0.33 1.7e+02 2.3 0.2 18 44 230 256 225 264 0.82 9 25 0.029 15 5.7 0.0 11 44 250 284 244 294 0.79 10 25 0.28 1.4e+02 2.6 0.0 20 43 288 311 283 320 0.83 11 25 0.27 1.4e+02 2.6 0.1 19 43 315 339 303 344 0.82 12 25 0.028 14 5.8 0.0 14 43 338 367 334 376 0.79 13 25 0.23 1.1e+02 2.9 0.1 20 43 372 395 367 399 0.86 14 25 0.0016 0.82 9.7 0.1 14 44 394 424 387 432 0.84 15 25 0.3 1.5e+02 2.5 0.0 20 43 428 451 421 456 0.84 16 25 0.23 1.2e+02 2.8 0.0 19 44 455 480 446 488 0.82 17 25 0.12 62 3.7 0.0 14 44 478 508 468 516 0.84 18 25 0.039 20 5.3 0.0 11 44 502 536 497 545 0.78 19 25 0.65 3.3e+02 1.4 0.1 20 44 540 564 534 572 0.82 20 25 0.53 2.7e+02 1.7 0.0 14 43 562 591 558 600 0.79 21 25 0.51 2.6e+02 1.8 0.1 20 43 596 619 589 623 0.85 22 25 0.019 9.6 6.3 0.0 11 45 614 649 610 658 0.78 23 25 1.8 9.4e+02 -0.0 0.1 21 43 653 675 648 679 0.83 24 25 0.0081 4.1 7.5 0.1 19 44 679 704 665 714 0.83 25 25 4.5 2.3e+03 -1.3 0.1 17 31 705 719 702 725 0.75
Sequence Information
- Coding Sequence
- ATGAATGACCTAACTGTTTGTCCTGGAAAGAGAAAGAACTCGTGTGATGTTTGCGATAAATCATTCAGTGAAAGTGGCAATTTGACAACACATCGACGTACccacacaggagagaaaccatTTGCATGCGATATATGCGATAAATCTTTTAGTCAGAGTGGCAATTTGACAACACATCGACGTACCCACATAGGAGAGAAACCATATGCGTGTGATGTATGTGAAAAATCATTCAGTGAAAGTGGCACATTGAAGGAACATCGACGTACccacacaggagagaaaccatTTGCATGCGATATATGCGATAAATCTTTCAGTCAGAGTTGCAATTTGACAACACATCGACGTACccacacaggagagaaaccatttgcatgcgatgtatgcgacatgTCTTTCAGTAAAAGTGGCACATTGACGAGTCATCGACGGACCCATACAGGAGAAAAACCATAcgcgtgtgatgtatgcgacATGTCTTTCAGTAAAAATGGCACATTGACGAGTCATCGACGGACTcacacaggagagaaaccatACCCGTGCGATATATGCGACATGTCGTTCAGTCAAAGTGGCTCATTGACGAATCATCGACGGTCTcacacaggagagaaaccatACATTTGTGATGTATGTGATAAATCATTCAGTGAAAGTGGCAAATTGACTAGACATCGACAGACCCACACGGGTGAGAAACCATATGCGTGTGATGTATGTGAAAAATCATTCAGTGAAAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatATGCGTGTGATGTATGTGATAAATCATTCAGTGAAAGTGGCAATTTGACAACACATCGACGTACccacacaggagagaaaccatttgcatgcgatgtatgcgacatgTCGTTTAGTCAAAGTGGCACATTGACGAGTCATCGACGGACCCATACAGGAGAAAAACCATAcgcgtgtgatgtatgcgaaaaaTCATTCAGTGAAAGTGACACATTGAAGAAACATCGACGTACccacacaggagagaaaccatTTACGTGCGATATATGTGACAAGTCGTTTGCTGAAAGTAGTTCATTGACGAGTCATCGACGGACTcacacaggagagaaaccatACGCGTGTGATATATGTGAAAAATCGTTCAGTGATAGTGGCAGATTGAAGAAACATCGACGTACccacacaggagagaaaccatTTGCGTGcgatatatgtaataaatctTTCAGTCAGAGTTGCAATTTGACAACACATCGACGTACccacacaggagagaaaccatttgcatgcgatgtatgcgacatgTCGTTTAGTCAAAGTGGCACATTGACGAGTCATCGACGGACCCATACAGGAGAAAAACCATAcgcgtgtgatgtatgcgaaaaaTCATTCAGTGAAAGTGACACATTGAAGAAACATCGACGTACccacacaggagagaaaccatATGCGTGTGATGTATGTGAAAAATCATTCAGTGAAAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatttgcatgcgatgtatgcgacatgTCGTTTAGTCAAAGTGGCACATTGACGAGTCATCGACGTACccacacaggagagaaaccatatgcgtgtgatgtatgcgaaaaaTCATTCAGTGGAAGTGACACATTGAAGAAACATCGACGTACccacacaggagagaaaccatttgcatgcgatgtatgcgacatgTCGTTTGCTGAAAGTAGTTCATTGACGAGTCATCGACGTACccacacaggagagaaaccatATGCGTGTGATGTATGTGAAAAATCATTCAGTGAAAGTGGCACATTGAAGAAACATCGACGTACccacacaggagagaaaccatttgcatgcgatgtatgcgacatgTCGTTTGCTGAAAGTAGTTCATTGACGAGACATCGACGGACCCACACGGGCGAGAAACCATACATTTGTGATGTATGTGATAAATCATTCAGTAAAAGTGGATCATTGAAGAGTCATCGACGGACCCACACGGGTGAGAAACCATTTGTATGCGATGTATGCGGTAAATCTTTCAGTCAGAGTTGCAATTTGACAAAACATCGACGGACCCACACGGGCGATCAACCATACATTTGTGATGTATGCGACATGTCTTTCAGTCAAATTGGCTCATCGACGAGTCATCGATGGACCCACACTGGCCAGAAACCATAA
- Protein Sequence
- MNDLTVCPGKRKNSCDVCDKSFSESGNLTTHRRTHTGEKPFACDICDKSFSQSGNLTTHRRTHIGEKPYACDVCEKSFSESGTLKEHRRTHTGEKPFACDICDKSFSQSCNLTTHRRTHTGEKPFACDVCDMSFSKSGTLTSHRRTHTGEKPYACDVCDMSFSKNGTLTSHRRTHTGEKPYPCDICDMSFSQSGSLTNHRRSHTGEKPYICDVCDKSFSESGKLTRHRQTHTGEKPYACDVCEKSFSESGTLKKHRRTHTGEKPYACDVCDKSFSESGNLTTHRRTHTGEKPFACDVCDMSFSQSGTLTSHRRTHTGEKPYACDVCEKSFSESDTLKKHRRTHTGEKPFTCDICDKSFAESSSLTSHRRTHTGEKPYACDICEKSFSDSGRLKKHRRTHTGEKPFACDICNKSFSQSCNLTTHRRTHTGEKPFACDVCDMSFSQSGTLTSHRRTHTGEKPYACDVCEKSFSESDTLKKHRRTHTGEKPYACDVCEKSFSESGTLKKHRRTHTGEKPFACDVCDMSFSQSGTLTSHRRTHTGEKPYACDVCEKSFSGSDTLKKHRRTHTGEKPFACDVCDMSFAESSSLTSHRRTHTGEKPYACDVCEKSFSESGTLKKHRRTHTGEKPFACDVCDMSFAESSSLTRHRRTHTGEKPYICDVCDKSFSKSGSLKSHRRTHTGEKPFVCDVCGKSFSQSCNLTKHRRTHTGDQPYICDVCDMSFSQIGSSTSHRWTHTGQKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019471;
- 90% Identity
- iTF_00019471;
- 80% Identity
- iTF_00019471;