Basic Information

Insect: Acyrthosiphon pisum
Gene Symbol: -
Assembly: GCA_005508785.1
Location: NC:120018677-120030328[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0046 2.3 8.3 0.0 20 44 29 53 19 61 0.85

2 18 0.058 30 4.8 0.0 21 44 58 81 53 89 0.86

3 18 1.7 8.5e+02 0.1 0.1 20 43 85 108 80 117 0.78

4 18 0.69 3.5e+02 1.3 0.0 19 46 112 139 99 147 0.79

5 18 0.42 2.2e+02 2.0 0.0 20 43 141 164 135 168 0.86

6 18 0.012 6.2 7.0 0.0 20 44 169 193 164 201 0.85

7 18 0.061 31 4.7 0.0 21 44 198 221 193 230 0.86

8 18 1.2 6.3e+02 0.5 0.0 21 45 226 250 219 257 0.78

9 18 0.2 1e+02 3.0 0.0 20 44 253 277 247 285 0.85

10 18 0.11 57 3.8 0.0 20 43 281 304 274 308 0.85

11 18 0.14 71 3.6 0.0 20 43 309 332 304 341 0.83

12 18 0.16 84 3.3 0.0 20 44 337 361 330 369 0.83

13 18 0.61 3.1e+02 1.5 0.1 20 43 365 388 360 393 0.84

14 18 0.0068 3.5 7.7 0.0 20 44 393 417 386 425 0.84

15 18 0.6 3.1e+02 1.5 0.0 21 44 422 445 417 453 0.84

16 18 0.94 4.8e+02 0.9 0.0 20 44 449 473 442 481 0.76

17 18 0.063 32 4.6 0.0 20 43 477 500 470 504 0.87

18 18 0.052 26 4.9 0.0 20 44 505 529 499 535 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0046	2.3	8.3	0.0	20	44	29	53	19	61	0.85
2	18	0.058	30	4.8	0.0	21	44	58	81	53	89	0.86
3	18	1.7	8.5e+02	0.1	0.1	20	43	85	108	80	117	0.78
4	18	0.69	3.5e+02	1.3	0.0	19	46	112	139	99	147	0.79
5	18	0.42	2.2e+02	2.0	0.0	20	43	141	164	135	168	0.86
6	18	0.012	6.2	7.0	0.0	20	44	169	193	164	201	0.85
7	18	0.061	31	4.7	0.0	21	44	198	221	193	230	0.86
8	18	1.2	6.3e+02	0.5	0.0	21	45	226	250	219	257	0.78
9	18	0.2	1e+02	3.0	0.0	20	44	253	277	247	285	0.85
10	18	0.11	57	3.8	0.0	20	43	281	304	274	308	0.85
11	18	0.14	71	3.6	0.0	20	43	309	332	304	341	0.83
12	18	0.16	84	3.3	0.0	20	44	337	361	330	369	0.83
13	18	0.61	3.1e+02	1.5	0.1	20	43	365	388	360	393	0.84
14	18	0.0068	3.5	7.7	0.0	20	44	393	417	386	425	0.84
15	18	0.6	3.1e+02	1.5	0.0	21	44	422	445	417	453	0.84
16	18	0.94	4.8e+02	0.9	0.0	20	44	449	473	442	481	0.76
17	18	0.063	32	4.6	0.0	20	43	477	500	470	504	0.87
18	18	0.052	26	4.9	0.0	20	44	505	529	499	535	0.85

Sequence Information

Coding Sequence: ATGGAGAAGAAACTTAATCAGTGCAATGTCTGTGACAAGTTGTTCTCTAAAATTACCAATTTGACAACgcatcgacgcacgcacactggtgaaaaaccgtacgcgtgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACGAAACACAAGCGGActcacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACAGcacatcgacgcacacacactggagaaaaaccgtacgcgtgcgaTGTTTGTGATAAGTCGTTCCCTACAAGTAGCGATTTGACAAcacatcgacgcacacacactggagAAAAGCCGTACGCTTGCGATGTATGCGAGAAGTCATTCTCCGCAAGTACTGATTTGACGATACATCGACGCatgcacactggagaaaaaccttTCCTttgtgatgtatgcgaaaagtcgtTCTCTAAAAGTGGCAATTTGACAGcacatcgacgcacacacactggagaaaaaccgtacgcgtgcgaTGTTTGTGATAAGTCGTTCTCTGAAAGTGGCAATTTGACAAGACATAAGCGTACGCACactggtgaaaaaccatacgcgtgcgatgtatgtGAAAAGTCGTTCTCTCAAAGTAGCCATTTAACGAAACACAAGCGGActcacactggagaaaaaccgtacgaGTGCGATGTATGTGAAAAATCGTTCTCCGAAACTACCAATTTGATGATACATCGACGCatgcacactggagaaaaaccgttccCTTGTGATGTATGTGAAAAGTCGTTCTCTAAAAGTACCAATTTGACAACgcatcgacgcacgcacactggtgaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCCGAAAGTACCAATTTGACAACgcatcgacgcacgcacactggtgaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCTCAAAGTGGCGATTTGACAGcacatcgacgcacacacactggtgaaaaaccgttCCCTTGTGATGTCtgcgacaagtcgttctctAAAAGTACCAATTTGACAACgcatcgacgcacgcacactggtgaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCCGAAAGTAGCCATTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgtgtgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgcgtgcgatgtatgtGAAAAGTCGTTCTCCGAAAGTAGCCATTTGACGAAACACAAGCGGActcacactggagaaaaaccgtacgcgtgtgATGTGTGCGAGAAGTCGTTCTCCGCAAGTACCGATTTGACGATACATCGACGCatgcacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTCTCTCAAAGTGGCAATTTGACAGcacatcgacgcacacacactggagaaaaaccgttcccttgtgatgtatgcgaaaagtcgtTCTCTGAAAGTGGCAATTTGATAAGACATAAGCGTACGCACATGGCACACTGA
Protein Sequence: MEKKLNQCNVCDKLFSKITNLTTHRRTHTGEKPYACDVCEKSFSQSGNLTKHKRTHTGEKPFPCDVCEKSFSQSGNLTAHRRTHTGEKPYACDVCDKSFPTSSDLTTHRRTHTGEKPYACDVCEKSFSASTDLTIHRRMHTGEKPFLCDVCEKSFSKSGNLTAHRRTHTGEKPYACDVCDKSFSESGNLTRHKRTHTGEKPYACDVCEKSFSQSSHLTKHKRTHTGEKPYECDVCEKSFSETTNLMIHRRMHTGEKPFPCDVCEKSFSKSTNLTTHRRTHTGEKPYACDVCEKSFSESTNLTTHRRTHTGEKPYACDVCEKSFSQSGDLTAHRRTHTGEKPFPCDVCDKSFSKSTNLTTHRRTHTGEKPYACDVCEKSFSESSHLTKHKRTHTGEKPYVCDVCEKSFSQSGNLTKHKRTHTGEKPYACDVCEKSFSESSHLTKHKRTHTGEKPYACDVCEKSFSASTDLTIHRRMHTGEKPFPCDVCEKSFSQSGNLTAHRRTHTGEKPFPCDVCEKSFSESGNLIRHKRTHMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019474;
90% Identity: iTF_00019474;
80% Identity: iTF_00019474;