Apis007034.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acyrthosiphon pisum
Gene Symbol
-
Assembly
GCA_005508785.1
Location
NC:81256823-81266053[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.9e-05 0.00097 19.4 2.5 2 21 238 257 237 259 0.94
2 16 0.00063 0.032 14.6 3.4 1 23 265 287 265 287 0.98
3 16 0.0012 0.062 13.7 2.7 3 19 295 311 293 315 0.89
4 16 0.0016 0.082 13.3 3.1 1 23 321 344 321 344 0.96
5 16 9.6e-07 4.8e-05 23.5 2.9 1 23 350 372 350 372 0.99
6 16 2.5e-05 0.0012 19.0 4.2 2 23 379 400 379 400 0.97
7 16 5.9e-07 3e-05 24.1 1.3 1 23 406 428 406 428 0.98
8 16 0.00014 0.0071 16.7 0.4 1 23 434 456 434 456 0.98
9 16 6.4e-05 0.0032 17.8 0.5 1 23 462 484 462 484 0.99
10 16 0.0016 0.08 13.3 1.6 1 23 490 512 490 512 0.99
11 16 8.5e-05 0.0043 17.4 1.7 1 23 518 540 518 540 0.99
12 16 0.00019 0.0093 16.3 0.5 1 23 546 568 546 568 0.98
13 16 8.3e-06 0.00042 20.5 0.5 1 23 574 596 574 596 0.99
14 16 1e-05 0.00052 20.2 0.4 1 23 631 653 631 653 0.99
15 16 0.021 1 9.9 1.4 2 23 661 683 660 683 0.95
16 16 0.1 5.1 7.7 2.7 3 23 688 710 687 710 0.88

Sequence Information

Coding Sequence
ATGAACAATATGGaacatttaaattcaaaaaaCAAGAATATTcctgtattcaataaaatattaaaagtatcacTTGTAAATTGTGATCATCTATTGAAATTTCATAACCAAAAATTAATCAGAAAAGAAAATGTTGAATTTGAAGACGTTGATAACACATCCGAAGAAAATGATTTTCAtcaaaaaGTTAAACTAAAAGACAACACTGTTAAGAAGATTGCTATTTcgcaaataaaacaacaaaatattcataaaagaaATGAGAATGGAACTATTCAAATACAtcaaaaaGTTAAACAAGAAGTCAGCACTGTTAAGAAGATTGCTATTTcgcaaataaaacaacaaaatattcataaaagaaATGAGAATGGAACTATTCAAATAAAtcaaaaaGTTAAACAAGAAGTCAGCACTGTTAAGAAGATTGCTATTTcgcaaataaaacaacaaaatattcataaaagaaATGAGAATGGAACTATTCAAATAAAttCATTTAATTCTAAAGAAAATATTGAGACTACTAATTATGACAATGGAGTTGACCGTGTTGATGATATGATACATAGCAGCATTATTGAAATTGTGCCTAAAAGATCACAGTTAATGTTATCTGATGTCGAACACCAGAAATCACgtttaaatacttatgaaaaaatattactctaCTCTAAGCAGAAGAGGACACCTAATCCGAATAAAACTTTAGAGTGCATGTACTGCAATAAGATATTTACACAGCAATCAAATTTAACGGTTCATTTAAGATgtcacactggtgaaaaaccataCGCATGTGATTTGTGTAAAAGATCTTTTGCTCAGAAACAAAATATGATGTGTCATATGAGAACACATACAGGATATAAACCTCATTTATGTCCAATTTGTAAAAAGACATTTAGCCATAAGTCATTATTAGACTACCATGAATGGACACACACTGGTATTAAACCATTTAAGTGTGAAATTTGTGCTAGTGAATTTTCTCGGAAATCAGGTTTAGTACATCACCAAAACCACAGTCACACAGGTGAAAAACTGTTTAAGTGCAATGTTTGTGACAAAACTTTTTACAGAAAAGCATTTATGAAAAATCATATGAGAGTCCATATTGCTCCGCAATTAGAAAAGTGCCATATTTgtgataaaacatatttttataagtcaaGTTTACGAAGACATTTGTTGAATCATTCTGGTGAAAAGATGTTTGAATGTGATATGTGTAAGAGATCCTTTAATcggaaatataatttacttgcccacttaaaaattcaTATGACTGAGAGACCTTATGAATGCAGTCTCTGCAGATCGACTTTTCCTACAGCATCAGAACTAGAAAGCCATACAAAATCTCACATCGGTGATAATACATTTCAATGCCATCTTTGCGATGCAAGTTTTATATTAGAATCACTTTTAGATATTCATATGAGATCTCATTGTGGAGATAGACCATTTCAGTGCCCTTATTGTTTAGCAACATACGCCCAGAGGAAAAGTTACTCTTACCATTTAAAAACTCACAGAGATCATGAATTGTATAAGTGTAATTGgtgtaaaatatcattttttcaaaaaaataagcTAATTGATCATTTAAGATTACATACTGGTGAGAAACCTTATAAATGCATCGAGTGTAACGAAAGATTTGGGCAAAAAGCTGTTTTACAATCACATATGAGAACTCACAGTactgaacaaaaatataaatgtgacaCATGTGGAGTagtcttaaaacaaaaattaaatttaattaaacacataaaaacCCATCTTGCcttcaaatcaaattttaggTGTAGATTTTGTAAGactaattttttacaaaaatcaacCTTTATGTGTCATATGAAAATGCattctaaaaacaattattataaatgtagtataTGTGGTATTTCATATCCACAAAAAACTGACATGATTAAACATGAAAAGACTCATATGATTGAAAAGGCTCTACTAACTTGTAATGTATGTAATCAATCTTTtccttcaaaattaaaacgtataaatcACGAGAGAAAATTTCATACCGTACAATCATGTTATTGTATTATctgttataaattgttttttgaaaaaaaggaaCTTACAAGACATATTAAATTGCATATGAAGAATATGTCATCTGAATGTTTGATTTGTAAAAAACCATTGCTACAAGTACCTGTTTCGGCTAAAGTATTAAGAGATATaactggaaataaaaaaaatttatgtgaTGAGTGTTCTATTTAA
Protein Sequence
MNNMEHLNSKNKNIPVFNKILKVSLVNCDHLLKFHNQKLIRKENVEFEDVDNTSEENDFHQKVKLKDNTVKKIAISQIKQQNIHKRNENGTIQIHQKVKQEVSTVKKIAISQIKQQNIHKRNENGTIQINQKVKQEVSTVKKIAISQIKQQNIHKRNENGTIQINSFNSKENIETTNYDNGVDRVDDMIHSSIIEIVPKRSQLMLSDVEHQKSRLNTYEKILLYSKQKRTPNPNKTLECMYCNKIFTQQSNLTVHLRCHTGEKPYACDLCKRSFAQKQNMMCHMRTHTGYKPHLCPICKKTFSHKSLLDYHEWTHTGIKPFKCEICASEFSRKSGLVHHQNHSHTGEKLFKCNVCDKTFYRKAFMKNHMRVHIAPQLEKCHICDKTYFYKSSLRRHLLNHSGEKMFECDMCKRSFNRKYNLLAHLKIHMTERPYECSLCRSTFPTASELESHTKSHIGDNTFQCHLCDASFILESLLDIHMRSHCGDRPFQCPYCLATYAQRKSYSYHLKTHRDHELYKCNWCKISFFQKNKLIDHLRLHTGEKPYKCIECNERFGQKAVLQSHMRTHSTEQKYKCDTCGVVLKQKLNLIKHIKTHLAFKSNFRCRFCKTNFLQKSTFMCHMKMHSKNNYYKCSICGISYPQKTDMIKHEKTHMIEKALLTCNVCNQSFPSKLKRINHERKFHTVQSCYCIICYKLFFEKKELTRHIKLHMKNMSSECLICKKPLLQVPVSAKVLRDITGNKKNLCDECSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00019554;
90% Identity
iTF_00019554;
80% Identity
-