Apis015692.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acyrthosiphon pisum
Gene Symbol
-
Assembly
GCA_005508785.1
Location
NC:22018754-22032409[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 4.5e-07 2.2e-05 24.5 0.5 2 23 273 294 272 294 0.97
2 17 0.0039 0.19 12.1 5.7 1 23 300 322 300 322 0.98
3 17 0.0013 0.066 13.6 2.7 3 19 330 346 328 350 0.89
4 17 0.0024 0.12 12.8 1.6 1 23 356 379 356 379 0.96
5 17 1.2e-06 5.8e-05 23.2 1.9 1 23 385 407 385 407 0.99
6 17 2.6e-05 0.0013 19.0 4.2 2 23 414 435 414 435 0.97
7 17 1.3e-06 6.5e-05 23.1 3.6 1 23 441 463 441 463 0.98
8 17 0.0001 0.0052 17.1 0.5 1 23 469 491 469 491 0.98
9 17 6.7e-05 0.0034 17.7 0.5 1 23 497 519 497 519 0.99
10 17 0.0017 0.085 13.3 1.6 1 23 525 547 525 547 0.99
11 17 9e-05 0.0045 17.3 1.7 1 23 553 575 553 575 0.99
12 17 0.0002 0.0098 16.2 0.5 1 23 581 603 581 603 0.98
13 17 8.8e-06 0.00044 20.5 0.5 1 23 609 631 609 631 0.99
14 17 1.1e-05 0.00055 20.2 0.4 1 23 666 688 666 688 0.99
15 17 0.022 1.1 9.8 1.4 2 23 696 718 695 718 0.95
16 17 0.36 18 6.0 4.9 2 23 724 745 722 745 0.91
17 17 6.2 3.1e+02 2.1 0.4 2 10 752 760 751 760 0.93

Sequence Information

Coding Sequence
ATGAACAATATGGaacatttaaattcaaaaaaCAAGAATATTcctgtattcaataaaatattaaaagtatcacTTGTAAATTGTGATCATCTATTGAAATTTCATAACCAAAAATTAATCAGAAAAGAAAATGTTGAATTTGAAGACGTTGATAACACAACCGAAGTAAATGATTTTCAtcaaaaaGTTAAACAAAAACACAACACTGTTAAGAAGATTGCTATTTcgcaaataaaacaacaaaatattcataaaagaaATGAGAATGGAACTATTCAAATACAtcaaaaaGTTAAACAAGAAGTCAGCACTGTTAAGAAGATTGCTATTTcgcaaataaaacaacaaaatattcataaaagaaATGAGAATGGAACTATTCAAATAAAtcaaaaaGTTAAACAAAAAGACAACACTGTTAAGAAGATTGCTATTTcgcaaataaaacaacaaaatattcataaaagaaATGAGAATGGAACTATTCAAATACAtcaaaaaGTTAAACAAGAAGTCAGCACTGTTAAGAAGATTGCTATTTcgcaaataaaacaacaaaatattcataaaagaaATGAGAATGGAACTATTCAAATAAAttCATTTAATTCTAAAGAAAATATTGAGACTACTAATTATGACAATGGAGTTGACCGTGTTGATGATATGATACATAGCAGCATTATTGAAATTGTGCCTAAAAGATCACAGTTAATGTTATCTGATGTCGAACACCAGAAATCACgtttaaatacttatgaaaaaatattactcttCACTAAGCAGAAGAGGACACCTAATCCGAATAAAACTTTAGAGTGCATGTACTGCAATAAGGTGTTTACAGTGCAATCAAATTTAACGGTTCATTTAAGAAGCCACACCGGTGAAAAACCATACGCATGTGATTTGTGTAAAAGAACTTTTGCTCACAAACAAAATATGATGTGTCATATGAGAACACATACAGGATATAAACCTCATTTATGTCCAATTTGTAAAAAGACATTTAGCCATAAGTCATTATTAGACTACCATGAATGGACACACACTGGTATTAAACCATTTAAGTGTGAAATTTGTGCTAGTGAATTTTCTCGGAAATCAGGTTTAGTTTATCATCAAAACCACAGTCACACAGGTGAAAAACTGTTTAAGTGCAATGTTTGTGACAAAGCTTTTTACAGAAAAGCATTTATGAAAAATCATATGAGAGTCCATATTAATACGCAATTAGAAAAGTGCCATATTTgtgataaaacatatttttataagtcaaGTTTACGAAGACATTTGTTGAATCATTCTGGTGAAAAGATGTTTGAATGTCATATGTGTAAGAGATCCTTTTATcggaaatataatttacttgccCACATAAAAATTCATATGACAAAGAGACCTTATGAATGCAGTCTCTGCAGATCGACTTTTCCTACAGCATCAGAACTAGAAAACCATACAAAATCTCACATCGGTGATAATACATTTCAATGCCATCTTTGCGATGCAAGTTTTATATTAGAATCACTTTTAGATATTCATATGAGATCTCATTGTGGAGATAGACCATTTCAGTGCCCTTATTGTTTAGCAACATACGCCCAGAGGAAAAGTTACTCTTACCATTTAAAAACTCACAGAGATCATGAATTGTATAAGTGTAATTGgtgtaaaatatcattttttcaaaaaaataagcTAATTGATCATTTAAGATTACATACTGGTGAGAAACCTTATAAATGCATCGAGTGTAACGAAAGATTTGGGCAAAAAGCTGTTTTACAGTCACACATGAGAACTCACAGTactgaacaaaaatataaatgtgacaCATGTGGAGTagtcttaaaacaaaaattaaatttaattaaacacataaaaacCCATCTTGCcttcaaatcaaattttaggTGTAGATTTTGTAAgactaaatttttacaaaaatcaacTTTTATGTGTCATATGAAAATGCATTCTAAAAACAATTCTTATAAATGTAGTATATGTGGTATTTCATATCCACAAAAAACTGACATGATTAAACATGAAAAGACTCATATGATTGAAAGGGCTCTACTAACTTGTAATGTATGTAATCAATCTTTtccttcaaaattaaaacgtataaatcATGAGAGAAAATTTCATACCGTACAATCATGTCATTGTCTTatctgttttaaattgttttttgaaaaaaaggaaCTTACACTACATATTAAATTGCATATGAAGAATATGACATCTGAATGTTTGATTTGTAAAAAATCATTTCTACAAGTACCTGTTTCGGCTAAAGTATTAAGAGATATaactggaaataaaaaaaaaatatgtgatgtGTGTTCTGTCATCTTCTAA
Protein Sequence
MNNMEHLNSKNKNIPVFNKILKVSLVNCDHLLKFHNQKLIRKENVEFEDVDNTTEVNDFHQKVKQKHNTVKKIAISQIKQQNIHKRNENGTIQIHQKVKQEVSTVKKIAISQIKQQNIHKRNENGTIQINQKVKQKDNTVKKIAISQIKQQNIHKRNENGTIQIHQKVKQEVSTVKKIAISQIKQQNIHKRNENGTIQINSFNSKENIETTNYDNGVDRVDDMIHSSIIEIVPKRSQLMLSDVEHQKSRLNTYEKILLFTKQKRTPNPNKTLECMYCNKVFTVQSNLTVHLRSHTGEKPYACDLCKRTFAHKQNMMCHMRTHTGYKPHLCPICKKTFSHKSLLDYHEWTHTGIKPFKCEICASEFSRKSGLVYHQNHSHTGEKLFKCNVCDKAFYRKAFMKNHMRVHINTQLEKCHICDKTYFYKSSLRRHLLNHSGEKMFECHMCKRSFYRKYNLLAHIKIHMTKRPYECSLCRSTFPTASELENHTKSHIGDNTFQCHLCDASFILESLLDIHMRSHCGDRPFQCPYCLATYAQRKSYSYHLKTHRDHELYKCNWCKISFFQKNKLIDHLRLHTGEKPYKCIECNERFGQKAVLQSHMRTHSTEQKYKCDTCGVVLKQKLNLIKHIKTHLAFKSNFRCRFCKTKFLQKSTFMCHMKMHSKNNSYKCSICGISYPQKTDMIKHEKTHMIERALLTCNVCNQSFPSKLKRINHERKFHTVQSCHCLICFKLFFEKKELTLHIKLHMKNMTSECLICKKSFLQVPVSAKVLRDITGNKKKICDVCSVIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00019559;
90% Identity
iTF_00019559;
80% Identity
-