Basic Information

Insect: Acronicta psi
Gene Symbol: -
Assembly: GCA_946251945.1
Location: CAMIUM010000066.1:1060419-1075497[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.047 2.9 8.7 0.2 1 23 198 220 198 220 0.98

2 11 0.00083 0.051 14.2 1.3 1 23 227 249 227 249 0.97

3 11 4.4 2.7e+02 2.5 3.4 1 22 253 274 253 275 0.86

4 11 0.0017 0.1 13.3 1.3 1 23 280 303 280 303 0.97

5 11 0.003 0.19 12.5 0.4 1 23 307 330 307 330 0.94

6 11 0.00023 0.014 16.0 0.4 2 21 343 362 343 367 0.94

7 11 1.4 84 4.1 0.2 2 23 408 430 407 430 0.95

8 11 0.0053 0.33 11.7 0.1 2 19 446 463 445 467 0.92

9 11 5.7e-06 0.00035 21.0 1.9 1 23 473 495 473 495 0.99

10 11 5.5e-06 0.00034 21.1 4.2 1 23 502 524 502 524 0.97

11 11 0.00018 0.011 16.3 4.3 1 23 530 553 530 553 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.047	2.9	8.7	0.2	1	23	198	220	198	220	0.98
2	11	0.00083	0.051	14.2	1.3	1	23	227	249	227	249	0.97
3	11	4.4	2.7e+02	2.5	3.4	1	22	253	274	253	275	0.86
4	11	0.0017	0.1	13.3	1.3	1	23	280	303	280	303	0.97
5	11	0.003	0.19	12.5	0.4	1	23	307	330	307	330	0.94
6	11	0.00023	0.014	16.0	0.4	2	21	343	362	343	367	0.94
7	11	1.4	84	4.1	0.2	2	23	408	430	407	430	0.95
8	11	0.0053	0.33	11.7	0.1	2	19	446	463	445	467	0.92
9	11	5.7e-06	0.00035	21.0	1.9	1	23	473	495	473	495	0.99
10	11	5.5e-06	0.00034	21.1	4.2	1	23	502	524	502	524	0.97
11	11	0.00018	0.011	16.3	4.3	1	23	530	553	530	553	0.93

Sequence Information

Coding Sequence: ATGAAGGTTCCTTTCCAGGCGACAGCGTCGGATGGTCTGCCGCAGCGTGTGTGCTGGGAGTGTGGAGTGAGGCTGGCTTCCGCGGCATCGTTCAGGTACAAGGCCGTCAAAAGTAACGAACTACTGCAAAGCCTTTTAGATACGGACGGTAATACAGCTCCAGACATATCAATTATAAATCGCGAACAGTATAATCTAACTTCTAGTCTAAGCCACAAGATATACGAAGCCAACCACGCCGACTATCACTTCGTATACACAGAACCCACTAATATAATACAAGAAATACAAGAAATTAATATTCCTGACGTAAATATTGAGACAGACATACATACACACGATTATACAGATTCTAGCGACGAAGTTTTAAAGGATATTCAGAAAAGAAAGAAGAAGAAGAAAGTCGTAAACGTCGAAAAACTCGGAAGAGTCGAGAAAGTCGAAAAAATCGCTGTTAAAGTCGATAAGCGCTATAAACCGGCCAACGAAGTGTTGAATAATGATATTTTCAATATCACAGATTTGTCTGAAGAACAACAAATGTATGAAATATTAAATAGACAATATTCGTCGAATTATAAAAATTCTGAGTATAAGTGTGCCGAGTGCTTCAAAGGTTTCCTAGATGAAGACGCGTACAAGGGACATATAAGCAGACATACAGATCAATGTGGCGAATATCAATGCTATATATGTAAGATTCGCTTCAAAAAGCTTCAAGCACTAAGGAACCACGCCACGTCGCACACGCAGAAGTTCAGCTGCAAGAAATGCACTTATGTAACTTTCCGAAGGCACGCGGCAAAATTACATGAAGACTTTCATAACGGGACCAAATATGTATGTCCCCATTGCTTGGAGAATTTCGATAAGTTATCAACGTATATGAGTCATGTGCGCATCAAGCACCCGTCGGGCTTCGTGTGTGAGCTGTGTGGGTACTCGTTCGTCAGTACCAAGGGACTCGGCCTCCATAAGAAGCTCAAACACCGGTTTGATGACCAAACGGTACCAACAGACGGGCCCCGTTGTACTGAGTGTGATGTGACATTCATTAGCACGGACGCTTTACAACGACACATAAAACTGTCGACGAAACACAGCGATGACCTAGAAACAAAAATACCACCTGCTCGCCGACCTGAACCTGAAGACAGAAGCAAAAAGAAGAGCACAGAAGTAAAGAAGAAACGCAGCTCCTGCAAGCCAGAAGAACCCATATCTTGTGAGCAGTGTGAATTGCAGCTGCCAGACCCCTTGTCATACTACAGACATTTCAGAAGGACGCATCCAGACAAGAATCGAACCAAGTACCCCTCCATGAAGGCCAAGAGCATGTGTGAAGTTTGTGGCAAAATGTTTCAGAGTCTCGCCCTTCTCCAAGACCATAGCTGGACCCACACCGACTCCAAACAGTTCCAGTGTACGGAGTGCGACAAACAGTTTCAACGTAAATACAGGCTGATAGCGCACCGCCGAGTGCACGGCGCCGTGAGACACATACACACATGCAACGTGTGTGAAAAGACATTCACCACGGCCAGCAACATGCACAGACATATGGTTAGTCACACTGGTCTGAAGCCGTTCAAATGCGAGATGTGCGGCAAATGCTTCAAGCACGCGAGCGAGAAGCGCGTGCATGTCACGTACGTGCATCTGAAGAAACCCTGGCCCAAACGCGCCCGAGGCAAGAGGAAACTCGAGGACACACAGAATCAACTACCGCCGCATGTTCCAATGGCTCCCGTGACCGAAATTATACAACCATTATGGCCGGCGATCAACGACCCTAAAATAAACATGATTGAAGATAAACCCATGTATTATAACATGAAAATATAA
Protein Sequence: MKVPFQATASDGLPQRVCWECGVRLASAASFRYKAVKSNELLQSLLDTDGNTAPDISIINREQYNLTSSLSHKIYEANHADYHFVYTEPTNIIQEIQEINIPDVNIETDIHTHDYTDSSDEVLKDIQKRKKKKKVVNVEKLGRVEKVEKIAVKVDKRYKPANEVLNNDIFNITDLSEEQQMYEILNRQYSSNYKNSEYKCAECFKGFLDEDAYKGHISRHTDQCGEYQCYICKIRFKKLQALRNHATSHTQKFSCKKCTYVTFRRHAAKLHEDFHNGTKYVCPHCLENFDKLSTYMSHVRIKHPSGFVCELCGYSFVSTKGLGLHKKLKHRFDDQTVPTDGPRCTECDVTFISTDALQRHIKLSTKHSDDLETKIPPARRPEPEDRSKKKSTEVKKKRSSCKPEEPISCEQCELQLPDPLSYYRHFRRTHPDKNRTKYPSMKAKSMCEVCGKMFQSLALLQDHSWTHTDSKQFQCTECDKQFQRKYRLIAHRRVHGAVRHIHTCNVCEKTFTTASNMHRHMVSHTGLKPFKCEMCGKCFKHASEKRVHVTYVHLKKPWPKRARGKRKLEDTQNQLPPHVPMAPVTEIIQPLWPAINDPKINMIEDKPMYYNMKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01377819; iTF_00017651;
90% Identity: -
80% Identity: -