Alep011437.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- Bcl11a
- Assembly
- GCA_947256265.1
- Location
- OX366541.1:2774709-2796247[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.034 2.7 9.1 0.5 1 23 256 278 256 278 0.97 2 11 0.0047 0.37 11.8 4.5 1 23 285 307 285 307 0.96 3 11 3.7 2.8e+02 2.7 3.4 1 23 311 333 311 333 0.88 4 11 0.0086 0.67 11.0 1.1 1 23 338 361 338 361 0.97 5 11 0.0081 0.63 11.0 0.4 1 23 365 388 365 388 0.94 6 11 0.014 1.1 10.3 0.1 2 21 401 420 401 421 0.94 7 11 1.4 1.1e+02 4.0 0.2 2 23 464 486 463 486 0.95 8 11 0.0055 0.42 11.6 0.1 2 19 502 519 501 523 0.92 9 11 4.4e-06 0.00034 21.3 1.9 1 23 529 551 529 551 0.98 10 11 3.2e-06 0.00025 21.8 3.3 1 23 558 580 558 580 0.95 11 11 0.00061 0.047 14.6 5.0 1 23 586 609 586 609 0.95
Sequence Information
- Coding Sequence
- ATGGGAAATAAAATTAAAACTTATTCGGAAACTAAGGTGTGCAGAATCTGCCTATGCGGTGACCGAAAACTGTATCTGATGAGGAAATATAATCTTCTTCTGTATTATGAACATATTACTAACATTGAGGCCACTGCTTCAGATGGTCTGCCCCAACGTGTTTGCTGGGAATGCGGAGTGAGACTGGCGGCCGCAGCATCCTTCAGGGTTATGGCTGTGAAGAGCAACGCGCTTCTCCACAACCTTTTGCAAGTGGATGGTGATACAGTTCCAGACATTTCAACAATAAATCGCGACCAGTATAACCTAACTTCTAGTCTAAGGCACAAAATATTCGAAGTAAACCACGCCGACTACCACTTTATATATACAGAACCCACTAATTTAAACCCAGATACAGAAAATATACACGAATTCGATCTATCTGGATTAGATTTTGAGACGGATTCACAACCACTTGACTGCATAGATACTGGCAGTGAAGTTGTTAGTGAATTCAAACAAAGCAAGAAACGGAAGAAGAAAAAGAAAGTCGGAAAAGTAAAAAAAGTCAGGAAAGTCGGAAACCTCGAAAAGGTCAGAAAACTCGGAAAACTCGAAAAGGTCGAAAAAGTCGGAAAAGTCGCAGTGAAAGTAGATAAGCGTTACAAGCCGGCAAACGAAGTGTTGAACAAAGATATTTTTAATATCACCGACTTATCTGAAGAACAGCAGATGAATGAAATCCTGAAAAGACAATATTCATCGAATTATAAAAATTCGGATTTCAAGTGTACTGAGTGCTTCAAAGGTTTCCTAGATGAAGAAGCGTACAAGGGGCATATTAGCAGGCACACAGATCAATGTGGTGTGCATCAATGTCATGTATGTAAGATACGCTTCAAAAAGCTTCAGGCGCTAAGGAACCACGCTACGTCGCACACGCAGAAGTTTAGCTGTAAGAAATGCACCTACGTCACTTTTAGAAGACATGCGGCTAAATTACACGAAGAATTTCATAACGGGACCAAATATATATGTCCCCATTGCTTGGAGAATTTCGATAAGATATCGACATATATGAGTCATGTACGCATCAAGCATCCGTCCGACTTCGTGTGCGAGTTGTGCGGGTTCTCGTTCGTCAGCACCAAGGGGCTCGGCCTTCACAAGAAGCTCAAACACCGATTCGATGATCAAACAGTACCGACAGATGGGCCTAGTTGTTCCAAGTGTGATGTCGTATTCCTCAGCTCGGATGCTTTACAACGCCATCTACAGCTGTCAGCGAGACACCGCGACGAATCAGAAACAAGACGGCCTACCCGCCGTTCTCACCGAGACAGTAGCAAAAAGAAAGACTCAGAAGTAAAGAAGAAACATAATACCTGCAAGCCAAAAGGACCCATATCTTGTGAACAGTGTGAACTCCAACTCCCAGACCCGCTGTCTTACTACAGACATTTCAGAAGAACGCACCCCGACAAGAATCGAACCAAGTATCCTTCCATGAAGCCCAAGAGCATGTGTGAAGTTTGCGGTAAAATGTTTCAGAGCCTGGCTCTCCTCCAAGACCACAGCTGGACCCATACGGACTCCAAGCAGTTTACATGCAATGTATGCGACAAACGTTTTCAACGTAAATATAGGCTGATCGCCCACAGGCGAGTGCATGGCGAGGCCAGAGATATACACGCCTGCACCGTGTGTGACAAGACATTCACTACCGCCAGCAACATGCACAGACATATGGTGAGCCACACCGGCCTAAAACCTTATAAATGCGAGATGTGCAGTAAATGCTTCAAGCACGCGAGCGAGAAGCGCGTGCACATCACATACGTGCATCTGAAAAAACCCTGGCCGAAGCGCGCCAGAGGAAAGAGACAACTCGATAACAGACAGAATCAACTGCCGCAACATGTCCCAATGCCTCCTGTGTCTGAAATTGTACAACCATTGTGGCCCGCTTGCAAAATAAACATTCTGATGGAGGATAAACCCATGTATTTAACTTAA
- Protein Sequence
- MGNKIKTYSETKVCRICLCGDRKLYLMRKYNLLLYYEHITNIEATASDGLPQRVCWECGVRLAAAASFRVMAVKSNALLHNLLQVDGDTVPDISTINRDQYNLTSSLRHKIFEVNHADYHFIYTEPTNLNPDTENIHEFDLSGLDFETDSQPLDCIDTGSEVVSEFKQSKKRKKKKKVGKVKKVRKVGNLEKVRKLGKLEKVEKVGKVAVKVDKRYKPANEVLNKDIFNITDLSEEQQMNEILKRQYSSNYKNSDFKCTECFKGFLDEEAYKGHISRHTDQCGVHQCHVCKIRFKKLQALRNHATSHTQKFSCKKCTYVTFRRHAAKLHEEFHNGTKYICPHCLENFDKISTYMSHVRIKHPSDFVCELCGFSFVSTKGLGLHKKLKHRFDDQTVPTDGPSCSKCDVVFLSSDALQRHLQLSARHRDESETRRPTRRSHRDSSKKKDSEVKKKHNTCKPKGPISCEQCELQLPDPLSYYRHFRRTHPDKNRTKYPSMKPKSMCEVCGKMFQSLALLQDHSWTHTDSKQFTCNVCDKRFQRKYRLIAHRRVHGEARDIHACTVCDKTFTTASNMHRHMVSHTGLKPYKCEMCSKCFKHASEKRVHITYVHLKKPWPKRARGKRQLDNRQNQLPQHVPMPPVSEIVQPLWPACKINILMEDKPMYLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00018453;
- 90% Identity
- -
- 80% Identity
- -