Apsi000946.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- Znf296
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000002.1:11175620-11193887[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2 2e+02 3.0 0.4 1 21 156 176 156 177 0.93 2 13 0.00042 0.026 15.2 0.6 2 20 190 208 189 212 0.95 3 13 0.0056 0.35 11.6 0.4 2 23 252 273 251 273 0.93 4 13 1.6 1e+02 3.9 0.2 2 23 349 371 348 371 0.89 5 13 0.021 1.3 9.8 0.1 2 20 377 395 376 397 0.91 6 13 3.5e-05 0.0022 18.6 0.8 1 23 405 428 405 428 0.98 7 13 0.00014 0.0089 16.6 2.2 1 23 449 471 449 471 0.98 8 13 1.8e-06 0.00011 22.6 2.8 1 23 478 500 478 500 0.98 9 13 1.2e-07 7.4e-06 26.3 2.3 3 23 514 534 512 534 0.96 10 13 2.8e-05 0.0017 18.9 3.2 1 23 540 562 540 562 0.99 11 13 2.4e-06 0.00015 22.2 2.6 2 23 569 590 568 590 0.96 12 13 4.1e-08 2.5e-06 27.8 1.5 1 23 596 618 596 618 0.99 13 13 0.0034 0.21 12.3 0.1 1 23 624 646 624 646 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCAGTTAAAAAAACCGAAATCAAAATTGAAGATGTGTGTCGAACATGTTTGTCTAAAAATAATCAATTATATTCTATTTTTGATGTACTTAAAGGTACCACAATAACATTTGATTTCATAGTTTCTTCAACAACCGGGCTTAAGATAAGAAAAAATGATGGTTTACCTTCGACAATTTGTTGCGAGTGTCGGGAAAAGGCAACAAAGGCTTTTGACTTTAAGAAAAAATCGGAAGAAGCTAATATGTCGCTAAGAGGCATTTTAAAAAGAGAAAGGAAAGATTGCTCGTTATCAATAAAAGGCGTCAGTCAATTAGGTGTGAAAACCGAAGATATTTCGTCAAATGAGACGGATGACTATATTGATAGTGACTTCAATGTTCTTTTGACTAGTGAGTCAGATTTACATGACTTGGACGCTGTTAAAAATGAAAGTGATGGCCAAGAAAGGAAAGTATGTTTTGTGTGCAAGAGTTGCTTAAATGTCTATGATTCACTAGAGAAATTACATAATCATGAGAAGATTTGCATAAAAGTTGAATGTGAAGAAACCAATCGTACTTACTGCCCACTATGTGGTACGTGTTACAATGGCGCTGAAAATTTAACGAAACATATGTGGGAAAGTCATGCCGATATTATGGGCCCAAAAAAGAGAGGCAGACCTAAAAAGATATTAACAAGTACAATCCTCAACAAGTTATCAGAAAACGGATTCTGCATAACATCTATGCCCGCAAAAAAGATTGAATGTGTATTTTGCGAGCGGCATTTCGACACCAAGGAAGAATTAAATTCACATGCTATAGAGCATACAGATATGAAGGTTCTAAGTTGTGAAAATTGCAAGAAAATATTCTTAGATATTAGAAAATTTTATGAACACAAATGCATTGAAGAAAAACCTGGTAGAAATGGAGTAAATGACTCTTCAAAAACTGAAACTATTGAAAAAAAGGCTCAACAATTCATGTTAGAAATAACATTGCGTGAATTCTTAGACTCGAGTATATATTTGGAAAATATCAGCTTGCTGCAAGTATGCAGTGCTTGCAGCTGTGTATTAACGTCTGAAGCAGATCTTATTAATCATCGCGATGCTGAACATCCCGAATTATCGCTTCGGTGCAACCTTTGCACCAAGGTGTTTGCCTCGCTGCGGTCTGCGGCGCGCCATCGAAGTATTTGTAAGCAAATTGAGAGAAAATATAAATGTAACACATGTGGCCTAAAATTTGCATACGAAATATCTTTGAATAAGCATATTTTAAGATATCATGAGGGACAAAGCGTGTCAGTTAAATTCATTGATCCTAAAACAAAAAGAGAAGAGAGAAAGTTTCAGTGTGATACTTGTAACAGAAATTTCTATAAGAGAGAGTTACTTGTCAAGCACACTAAAATACACATGCCACTCGAAAATTGCTTCGAATGTGATGTTTGTAAAAAGAAGTTCTACAGAAGAGATAATCTTCGGTCTCATAAACGAGTTCATGATTTACAGCGTGATAAGACTTCATCTAGTAATTGCTTATGCCTTTACTGTGGCCGTAGTTTCTCTAATTCGTCGAACTTAATCGTACACATGCGCCGACACACCGGAGAGAAACCTTACAAATGTGATTTTTGTGGAAAAGGTTTTCCCAGATCCTCTGATCTTCAGTGTCACCGCAGATCTCACACCGGCGAAAAACCTTGCATTTGTCGTGTTTGTGGCAAAGGGTTTTCGCGCAGTAACAAATTGTCGCGTCACATGCGCGTACACACTGGCCAGAAACCGTACAAGTGTACGTATTGCGATAAGGCGTTTTCGCAGAGCAACGATCTCAATCTGCACATACGCCGTCACACTGGCGATCGGCCCTATATCTGTGAAGTGTGTGGCGACAGATTCATTCAGGGTACAGCGTTACAGAATCATAGAAGAGCTCATGGTCACTTCCCTGCTCCGACTGCTGCGACTGAAGTACAAGTACAGTCTGAAGTGCAAGCACTCACCTTTGCAGTCCAGAGTATAAGTCATAATAATAGTCACTAA
- Protein Sequence
- MASVKKTEIKIEDVCRTCLSKNNQLYSIFDVLKGTTITFDFIVSSTTGLKIRKNDGLPSTICCECREKATKAFDFKKKSEEANMSLRGILKRERKDCSLSIKGVSQLGVKTEDISSNETDDYIDSDFNVLLTSESDLHDLDAVKNESDGQERKVCFVCKSCLNVYDSLEKLHNHEKICIKVECEETNRTYCPLCGTCYNGAENLTKHMWESHADIMGPKKRGRPKKILTSTILNKLSENGFCITSMPAKKIECVFCERHFDTKEELNSHAIEHTDMKVLSCENCKKIFLDIRKFYEHKCIEEKPGRNGVNDSSKTETIEKKAQQFMLEITLREFLDSSIYLENISLLQVCSACSCVLTSEADLINHRDAEHPELSLRCNLCTKVFASLRSAARHRSICKQIERKYKCNTCGLKFAYEISLNKHILRYHEGQSVSVKFIDPKTKREERKFQCDTCNRNFYKRELLVKHTKIHMPLENCFECDVCKKKFYRRDNLRSHKRVHDLQRDKTSSSNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICRVCGKGFSRSNKLSRHMRVHTGQKPYKCTYCDKAFSQSNDLNLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPAPTAATEVQVQSEVQALTFAVQSISHNNSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00072259;
- 90% Identity
- -
- 80% Identity
- -