Apsi017726.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000073.1:4256147-4265020[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.99 6.8e+03 -3.8 0.4 61 89 69 99 38 103 0.48 2 5 1.1e-82 7.8e-79 265.3 16.6 1 297 121 406 121 408 0.94 3 5 0.91 6.3e+03 -3.6 11.7 1 44 405 448 405 479 0.80 4 5 1.7 1.2e+04 -4.6 1.8 52 77 510 535 504 541 0.60 5 5 1.6 1.1e+04 -4.4 3.7 146 171 561 586 556 597 0.42
Sequence Information
- Coding Sequence
- ATGGGACAACGCTCTGAAGTGGCCACGCCTGACAATAGCGACGAGGAGAGCGGCGATGCCTTCACTGACGGCGATTTTGGAGATTCCGATGATGAAACAATCGTCGAACGTCATGATGAGGCTAAACCCTCACATATGCCCGTCAATGAAACTGTCAATGAAGATATTACCAAAAATGCTGCTACGAACGGTCACTCTAGTGTAGAAGAGCACCCCAGAATTAATGGTCGTAAGAATAGTGAGATCAGTCAATCAAGTGATGCTGAAAACCAAAGCTTAGTATTATCTGATTTGCGCAGAGATTCACACGGCGATCAGAATCCTTCAATAGTTGGAATTCTAGGCGATCAGCACAACCATGCTGAACAGCGATTAGCAGCGCGTCGGGCTGCGCGAGCGGAGGCGCGCGAGATACGCATGCGCGAACTGGAGAGACAGCAGCGCGAACAGGAGGATCATGCCGACAAAGCGTACGATATGTATGCCGGTAAAACACCAGAGTCGGTGGGTCGTCGCGGAGGCACGCGGCTGGCGGCGCTCAGCCCGGCCGGCGTGCTCTCACCACGGCGCAGCTCCGAGGACTCCGTCGATGACGGCTTCAGCATCAAAGATCTCAGGCATGAGCTAAAGGAGGTGGAGGAAAAGTTTCGCAAGGCGATGATCCTAAACGCGCAGTTGGATAACGACAAGGCGGCGCTAGGCTACCAACTGGAACTGCTCAAGGATAGGATAGAGGAATTGCACGAAGAATACGCTCAATTGCAGCGCGAGCATAAAGAGAAATGTTCGTCATTTGAGCGCCTAAAGCGAGAGCATTCTGCAGTGACGCGGGAGCTGAGCGCAGCGCGGGACGCCGTCCGCGCCCGCGATGCTGCCGCCGACGCCGCCGGCTTCGCCTTCGTGGACGCGGCCGCCCCGCCCGGCGCCGGCCCGCCCGGCAGCGCCCCGCCGGCGCTCGCGCTCGTCACTCACTCAGCGCAGCAGCTCCTCGACGACGCCGGGGAAGGCACGCTGGATGTTCGGTTGCAAAATCTTCTGAGTTCGAAGCAGGCACTAGAATCTGAGGTGCGCAAATTGAAGCTACAGCTGAACGAAGAGCGCGCCGCTCGTCAGAATGGAGTCGCCAATCACCACGACAACGAATACGAAAACGAACTGGAAACTGTTCGAAAGTCCGTGTCCGAGGCGAAGGCGCGGGCGGCGCGAGCCGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTGGCGCGCCTCGAGGCACAGCTGCAGCGCCTGCGCGCCCGCCACGCGCACCAGGACGAGCACGAGGAGCAGCTCAAGCACGAGCGCCGCCGTCTGCAGCGCGAGGCGGCGCTGCAGGCCCCTCGAGGCACAGCTGCAGCGCCTGCGCGCCCGCCACGCGCACCAGGACGAGCACGAGGAGCAGCTCAAGCACGAGCGCCGCCGTCTGCAGCGCGAGGTACTGCAATCATGTCACTGATACTTATCATACTCCTGGCGCGTGCCCGAGGCGGCGCTGCAGGCCCCTCGAGGCACAGCTGCAGCGCCTGCGCGCCCGCCACGCGCACCAGGACGAGCACGAGGAGCAGCTCAAGCACGAGCGCCGCCGTCTGCAGCGCGAGGTACTGCAATCATGTCACTGATACTTATCATACTCCTGGCGCGTGCCCGAGGCGGCGCTGCAGGCCCCTCGAGGCACAGCTGCAGCGCCTGCGCGCCCGCCACGCGCACCAGGACGAGCACGAGGAGCAGCTCAAGCACGAGCGCCGCCGTCTGCAGCGCGAGGTACTGCAATCATGTCACTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERHDEAKPSHMPVNETVNEDITKNAATNGHSSVEEHPRINGRKNSEISQSSDAENQSLVLSDLRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPESVGRRGGTRLAALSPAGVLSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHSAVTRELSAARDAVRARDAAADAAGFAFVDAAAPPGAGPPGSAPPALALVTHSAQQLLDDAGEGTLDVRLQNLLSSKQALESEVRKLKLQLNEERAARQNGVANHHDNEYENELETVRKSVSEAKARAARAEAEAALQAAHVARLEAQLQRLRARHAHQDEHEEQLKHERRRLQREAALQAPRGTAAAPARPPRAPGRARGAAQARAPPSAARGTAIMSLILIILLARARGGAAGPSRHSCSACAPATRTRTSTRSSSSTSAAVCSARYCNHVTDTYHTPGACPRRRCRPLEAQLQRLRARHAHQDEHEEQLKHERRRLQREVLQSCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -