Apsi013741.1
Basic Information
- Insect
- Acronicta psi
- Gene Symbol
- BBX
- Assembly
- GCA_946251945.1
- Location
- CAMIUM010000052.1:1284174-1288638[+]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-18 1.6e-15 57.5 0.1 2 69 15 82 14 82 0.98
Sequence Information
- Coding Sequence
- ATGCACGATCAAGAAGCGGACAGTGAGCCGGCGCATCACGCGCGCCGCCCTATGAACGCATTCCTCATCTTCTGCAAGCGACACCGGAGCGTAGTGCGCGATAAATACCCCAACCTGGAAAACAGATCAATAACCAAGATCCTCGGCGAATGGTGGGCCAACTTGGACAAGGAAGAGAAAGCTTGTTACACAGGTCTTGCTAAACAGTACAAAGACGCGTTCTTCAGTGCCAACCCCGACTTCAAGTGGTACAAGTTGCCCGCGCCACCGCTGCGGACGCTCTCCTCCCGACCCAGAGAGTCCAACGAGAAGCCCGTGGAGTCCCCCCACAGTGAACATCACGACTTGGAACTAGAAAAAACCAACAACAACTCCACTAAAGTAGACTTCAACAAAAAGTCTAAGGATGAACCATTCGAGGGCGTGTCTAAACCACTTTCCATGTTCACGCCTGGAAAGCTGGCCGACGAAGCCCAAATGGGAGGCCTCAGCAGCCTCCTAGCCACTAAGACTGAAACTCAAACCACAAACCCTTATTACTCACCCCCATGCTTTAAGTTCAACGCGATCTCAACGCCAAACGAATACAGATCTCATAACTTAATAGAACGGGCCAAGGCGAAAGGTCTACACAGCGAAGATAGCATACGCGAGCTGCAGAACGCGCTCACTGAAACCTCCAGGGTGTTCGAGGAGGACTTCGATGATGACGAGAAAAAGAGGATTTATTACGGAATACCGAACGACCAGTTCACTAACCAGGATGTGATAGACCAAATAGTTGATAAGAGATTTTCTAAAGAGGACGAGTACGGTTACCAGAGGAACTGGTCTGACGACGAGAAAAACATGAGATCTGGCAGATCGTGCAAGGGTAAGAGGTACCAGGAGTTCATGGCTGTTGGGGGACTCATTGTGAACAAGCGGCAAAAGAGGGACTCGGACAAGCCAGACGAGAACTACAGCGCGACCTGTAGCTGGGATCCTGGCAGTCTGCGCGATGAGAACACAGACGCCGACGAGCCGAAACAAAACAGCTCGCCGAACGACAAGCCGGCCGACAGCGAGGACAAGACCGACACAGCCGACACGCCCGAACCCGACAATAATGCTAACAAAACTTTCAAGGCTGCCGACTTCGACTTGGACGCTAAAATAAGAGCCTTGCCCTCACTTAGTTTAGAGAAATTCCAGCAGAAGAAACGCGAAAACAAACGCAAGAAGAAAACCATCAACCTGAAACCGAAAGCGCTCGAGTCTTCGCACATAGTCAATTCAGTTCCTAGATCCATGCTGGAGGACAGGCGGGAGATGGTGGAGCACTGGCGGGACACGGTCATCGGCAGCCAGAAGCGGAAGCCGCGCAAGATCAGCATCACGAGACTCGAGATCAACAGCATGGTGTCCAGCGTCGACTTGAACGAGGCGCACAAAATAAGTCCAGAGATAAAGATCGCCATGGAAGCGCCGTGCACTGCCGTCCAGAACATGGAGATCTGCAAGCAGCAGCACAACGTGGACCTGCTGGCCCTCGCCACCCTCGCCGAGGTCGCCTCCAACACCTCCAAGCTGGAGGACTCCTCCATCATACAGAACATGACCGCCAAAGCAAGCGACCCCCACGCTTCCATGGTATAA
- Protein Sequence
- MHDQEADSEPAHHARRPMNAFLIFCKRHRSVVRDKYPNLENRSITKILGEWWANLDKEEKACYTGLAKQYKDAFFSANPDFKWYKLPAPPLRTLSSRPRESNEKPVESPHSEHHDLELEKTNNNSTKVDFNKKSKDEPFEGVSKPLSMFTPGKLADEAQMGGLSSLLATKTETQTTNPYYSPPCFKFNAISTPNEYRSHNLIERAKAKGLHSEDSIRELQNALTETSRVFEEDFDDDEKKRIYYGIPNDQFTNQDVIDQIVDKRFSKEDEYGYQRNWSDDEKNMRSGRSCKGKRYQEFMAVGGLIVNKRQKRDSDKPDENYSATCSWDPGSLRDENTDADEPKQNSSPNDKPADSEDKTDTADTPEPDNNANKTFKAADFDLDAKIRALPSLSLEKFQQKKRENKRKKKTINLKPKALESSHIVNSVPRSMLEDRREMVEHWRDTVIGSQKRKPRKISITRLEINSMVSSVDLNEAHKISPEIKIAMEAPCTAVQNMEICKQQHNVDLLALATLAEVASNTSKLEDSSIIQNMTAKASDPHASMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383651; iTF_01377469; iTF_00273600; iTF_00809136; iTF_00810066; iTF_00072151; iTF_00274425; iTF_01538745; iTF_01332707; iTF_01166692; iTF_01502088; iTF_00706959; iTF_00637650; iTF_00908844; iTF_01075439; iTF_00677618; iTF_01436087; iTF_01425065; iTF_01084266; iTF_01526017; iTF_00907045; iTF_00907878; iTF_00906151; iTF_00036721; iTF_00038770; iTF_00726357; iTF_00831223; iTF_00364024; iTF_01527226; iTF_01439932; iTF_00039810; iTF_00042630; iTF_00043495; iTF_00041772; iTF_00040814; iTF_00374118; iTF_00449103; iTF_00952715; iTF_01192716; iTF_01532015; iTF_00375217; iTF_00037812; iTF_00850740; iTF_01085237; iTF_00300214; iTF_00758167; iTF_00851799; iTF_00951833; iTF_00794604; iTF_00636401; iTF_01062801; iTF_01061890; iTF_01063761; iTF_01533049; iTF_00928703; iTF_01533933; iTF_01534831; iTF_00711862; iTF_00445179; iTF_00709234; iTF_00001172; iTF_01221570; iTF_00327077; iTF_01487697; iTF_00185309; iTF_00186175; iTF_01260099; iTF_01285539; iTF_01338758; iTF_00171754; iTF_00924682; iTF_00049900; iTF_01342215; iTF_00000333; iTF_01340111; iTF_00785204; iTF_00784392; iTF_00786002; iTF_00783481; iTF_00450110; iTF_00017334; iTF_01361622; iTF_01363108; iTF_01064663; iTF_00282392; iTF_00281330; iTF_01173274; iTF_01152157; iTF_00931406; iTF_00932552; iTF_00302110; iTF_00301176; iTF_00889214; iTF_01491934; iTF_00446143; iTF_00447144; iTF_00685439;
- 90% Identity
- iTF_01377469; iTF_00383651; iTF_01342215; iTF_00171754; iTF_00049900; iTF_00017334; iTF_00072151; iTF_01538745; iTF_00450110;
- 80% Identity
- -