Alep004609.1
Basic Information
- Insect
- Acronicta leporina
- Gene Symbol
- -
- Assembly
- GCA_947256265.1
- Location
- OX366527.1:12690533-12705909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1 87 4.3 0.2 2 23 23 49 23 49 0.85 2 13 0.12 9.5 7.3 4.2 1 23 593 615 593 615 0.96 3 13 2e-05 0.0015 19.3 1.6 2 23 623 644 622 644 0.95 4 13 0.25 19 6.4 1.1 1 23 648 670 648 670 0.96 5 13 2.8e-05 0.0022 18.8 0.7 1 23 675 698 675 698 0.98 6 13 0.0006 0.046 14.6 0.1 3 23 704 725 703 725 0.96 7 13 0.017 1.3 10.0 0.2 3 21 740 758 739 763 0.91 8 13 0.00041 0.031 15.1 0.4 3 23 773 794 773 794 0.98 9 13 0.25 19 6.4 0.5 2 23 814 836 814 836 0.96 10 13 0.003 0.23 12.4 0.6 2 23 848 869 847 869 0.96 11 13 0.022 1.7 9.7 2.9 1 23 1168 1190 1168 1190 0.98 12 13 9.2e-06 0.00071 20.3 1.0 1 23 1196 1218 1196 1218 0.97 13 13 0.0017 0.13 13.2 1.5 1 23 1224 1247 1224 1247 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCTCGAAGAAAATACAGCCCACTATGGACACATTTTGAAGAAATAGCGCCGAAAAAGGCTAAATGTACATATTGCTCTCGCATCATAGCGCTATCGTCGAGTTCAATTGGCAGTTTAACTCGTCACATGAAAGCGGTGCATCCAACTATAAATATAAAAGTAGACAGACAAGAATCTACTATAAGGGAGATAGAGATTTCTGAAAGACCCCCAGTTTCACAGGCAGTGGTAAGTGATGAAACTAACACGGCCATCAGCAGCACTACCACCAGTACGGCAACGGCAACCACCAGTGCCATTACTACCACCAGTAGACAGAACATTCCTTCTATGAGAGATTACGTAATAGTAAAAAAACCATTGCCTCAACATAGATTACAACAGCTTGATGAACAACTCGTAAGGATGATCGCTAAAGGATATCATGCCTTACGCATGGTAGAAGAAAAAGAATTTCGCACATTTGTTGAAATGTTAAATCCGGGGTACACCTTGCCGACTCGAAAAACATTGTCCGAAAGCTTACTCCCAAAGTTATATAATAAAGTACTTGAGTCTGCTAAATTTCAAATAAAAAAGGCAACCGCCGTCTGTATAACAACAGACGGTTGGACATCCATCGTTAATGATGGATATATTGCTGTAACGGCTCATTTTATAGACCAAGAGATAGACAAATTGGTATCTATCATGATTGGCTGCATACACTTTGAAGAAAGGCACACTAGTTTAAATTTAAAAGACTTTCTTCATGAAAAATTTGTAGAGTGGGGTATTGACAGATATATTAGTGCAGTAGTCAGTGATAATGCTGCCAACATTGTCGGTGCAGTTCATCTCGGTGGTTGGCGGTCTATTAGATGCTTCGCTCACTCTTTAAATTTGGTTGTCCAAGCAAGTATTTGTAAAATAAAGGATTCAGTTGACAAAATTAAACAAATCGTGGAGTATTTTCACCGAAGTCCACCTGGTGCAAAAAAATTAAAAGAAATACAGGAGCAAATGCAGCTTGAACCACTAAAATTAAAACAAGATGTTGCAACTCGGTGGAATTCAACATACGATATGGTATGTCGTATAAACAAAATAAAAAATGCAGTGATTGCGACACTAGCTCTTATGCGGACAGATTTGATGCTGACTGAAAATGATTGGATCGTAATTGAAAAATCGATTCCTATATTAAATATATTTTATGAAGTAACTAAAGAGATTAGTTCTGAAGAATATGTGACGTGTTCAAAGGTCATCGTATTTTGTAAATTAATAAATTCACAAATTAATAAATGTACCGAGGAATCAGTTACTCCTATTCAAGAATTAATTAATTCATTAAGAGTACAAATGATGCTACGATTTCAAGACATAGAGAGTAATTTGCTACTCAGTGAAGCCACCATCCTTGATCCGAGATTTAAAAAAAATGGATTCAGCAATGTAAAAAATTTTGATAAGGCAGCAGCACAACTCAAATTAAAAATCGGTGCTATGGACAACATAAGTGGAATAGTGCCTGTTCAAGTTGAAGAGGCACCAATGCCTCCGCCGAGTGTGACTTCCATTTGGGAAGACTTTGATGCCGAAGTGTCGAAACTTGTGCCTGAAAATCCAATAGCAGCTGGTATTGTCGAGTTCGACAAGTACATACAAGAACCATTAATCAAGAGGCATGAAAATCCTCTCAAGTGGTGGAAGGAACGCAAAGCCTTAGAAGAGCAGTTGGAAGAAGTGACCAAGCGCAAGCAGTCTTCTAACTACTTGAACTGTCCATACAAGTGTCACTTGTGCTTTAAGGGGTTCAACAACACGCTTGCGTGGGAACACCACGTCACTAAACATTCTCCGAACTCAGGCGACGTAGAGTGTACCATATGCAAGTACAGATTTAAAACGAAACGCAATCTTCAGAGGCATGCCCTCAACCACGGGAAGAAATATGTTTGTAAATTATGTCCATACAACTCTAGCAACATTACCACGGTCAAGCATCATCTGGGTTCTCACAAAGGAGTAACGTATAAATGCGAATATTGCGACGAAGTCTTCACAGTAAGAACGACGTACGTAGTCCATATACGCAGCAAGCATCCGTCGGAGAACATTTGCGGGTACTGTGGATATTCGTTCTACAGCAAACAGGGCCTCGTCGTGCACAAGAATATGGTGCATAGAGATATAGTAAAAGCTGAAGAGAATAAAGAAGGTCCGTACTGCGCGGACTGTGACGTCACGTTCATATCTACAGAGGCGTTCAAGCGACACTTGGTGACATCCGTTAAGCACACCAAGACTGCGGACTCTATTAACGGGTGCCGGGTATGCGGCGCGACGTTCGCGGATCCTGAAGAGTTGCGATTGCATCACCGTAAGGAGCATCCCAAGAAACAGCCCCAGCACTACCGCAAGAAGACCATCAGTAACAAATGGCCAGCCAAGTGCGAACACTGTCCGGAACAGATTGCAAACGCGCGCGCTTATTGGAAGCATTTCCGTCTAATGCATCCGAACGAGAACTACCCGGTGCAAAAGAAATGCGTGTGCGATGTTTGTGGCAAACGATTCGTGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGGTTACAGCTGGTCGTGCTTGTAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGGTTACAGCTGGTCGTGCTTGTAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGGTTACAGCTGGTCGTGCTTGTAGTGCAACGCGCTGCTGGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGGTTACAGCTGGTCGTGCTTGTAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGGTTACAGCTGGTCGTGCTTGTAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGGTTACAGCTGGTCGTGCTTGTAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTGCGCGTGCTCGCGCGCGTGCTACAGTGCAACGCGCTGCTGGCGGCGCACGCGCGCGTGCACGCGGGCGCGCGGCCCTACGCGTGCTCGCGGTGCGCACGCGCATGCTACAGCGCGCACGACCTGCGCGTGCACCAGCAGAAGCACTCCGACGCGCGCCCCTTCGCCTGCACGCTCTGCCCGCAGGCCTTCAAGCGGAAGGAGGCGCTCCATAGGCACATAAAGATACATTCCGGTGATAACCCATACAAATGTGAGATATGCGGGGTCGCCTTCAACAAATCGTGTACGAGAACGCTTCACGTGCGCACAGTTCACACTAAGGAGCCTCCACCATCGCGCAAACACCGAAACAAACTTCCCAAGTAA
- Protein Sequence
- MASRRKYSPLWTHFEEIAPKKAKCTYCSRIIALSSSSIGSLTRHMKAVHPTINIKVDRQESTIREIEISERPPVSQAVVSDETNTAISSTTTSTATATTSAITTTSRQNIPSMRDYVIVKKPLPQHRLQQLDEQLVRMIAKGYHALRMVEEKEFRTFVEMLNPGYTLPTRKTLSESLLPKLYNKVLESAKFQIKKATAVCITTDGWTSIVNDGYIAVTAHFIDQEIDKLVSIMIGCIHFEERHTSLNLKDFLHEKFVEWGIDRYISAVVSDNAANIVGAVHLGGWRSIRCFAHSLNLVVQASICKIKDSVDKIKQIVEYFHRSPPGAKKLKEIQEQMQLEPLKLKQDVATRWNSTYDMVCRINKIKNAVIATLALMRTDLMLTENDWIVIEKSIPILNIFYEVTKEISSEEYVTCSKVIVFCKLINSQINKCTEESVTPIQELINSLRVQMMLRFQDIESNLLLSEATILDPRFKKNGFSNVKNFDKAAAQLKLKIGAMDNISGIVPVQVEEAPMPPPSVTSIWEDFDAEVSKLVPENPIAAGIVEFDKYIQEPLIKRHENPLKWWKERKALEEQLEEVTKRKQSSNYLNCPYKCHLCFKGFNNTLAWEHHVTKHSPNSGDVECTICKYRFKTKRNLQRHALNHGKKYVCKLCPYNSSNITTVKHHLGSHKGVTYKCEYCDEVFTVRTTYVVHIRSKHPSENICGYCGYSFYSKQGLVVHKNMVHRDIVKAEENKEGPYCADCDVTFISTEAFKRHLVTSVKHTKTADSINGCRVCGATFADPEELRLHHRKEHPKKQPQHYRKKTISNKWPAKCEHCPEQIANARAYWKHFRLMHPNENYPVQKKCVCDVCGKRFVCNALLAAHARVHAGARPCACSRACYRLQLVVLVVQRAAGGARARARGRAALRVLARVLQCNALLAAHARVHAGARPCACSRACYRLQLVVLVVQRAAGGARARARGRAALRVLARVLQVTAGRACSATRCWRPCACSRACYRLQLVVLVVQRAAGGARARARGRAALRVLARVLQCNALLAAHARVHAGARPCACSRACYRLQLVVLVVQRAAGGARARARGRAALRVLARVLQCNALLAAHARVHAGARPCACSRACYRLQLVVLVVQRAAGGARARARGRAALRVLARVLQCNALLAAHARVHAGARPYACSRCARACYSAHDLRVHQQKHSDARPFACTLCPQAFKRKEALHRHIKIHSGDNPYKCEICGVAFNKSCTRTLHVRTVHTKEPPPSRKHRNKLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017531;
- 90% Identity
- iTF_00017531;
- 80% Identity
- iTF_00017531;