Ains000088.1
Basic Information
- Insect
- Acromyrmex insinuator
- Gene Symbol
- -
- Assembly
- GCA_017607455.1
- Location
- JAANHZ010000132.1:2608683-2613857[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.014 41 3.4 0.0 20 34 175 189 163 207 0.75 2 4 7.6e-05 0.23 10.7 0.0 19 46 233 260 224 268 0.84 3 4 0.011 31 3.8 0.0 26 46 268 288 263 292 0.91 4 4 0.0036 11 5.3 0.3 23 45 320 342 296 347 0.82
Sequence Information
- Coding Sequence
- atggtCTGTTCTACGTGTATCAAGAGACTGGAGGGTGTCCATCGTTTCGCAATGATGGCATACCGTACCCAAGAGAAGTTGAGATCACAGCTTTATGGTAACATTGACAATACGAATCCTGTACAAGAAGATGAGATACAGAATATTAAAGACATGCAAGATACTATAAAAAAGGCGGAAGATCGAGGACTATTGCATTCGATATTGACAaagGGTGCGATAGAAATTTTAACTGAGGACGAACTGGGATCACAGGAATCAAATTTTCAAGAGGTCAAACGTTGTACTCCGAACATGGAGGAAATGGAGGTAAAAGTGGATCCAATGCTATTTTTACAATGTGGCATGGAACAGTCTACATCCGAAGCTTCAGATTCCTCAGATAACGAGGAAGAAATAACAAGGACACATACACCAGAACCATTACCTTTAATGAACAAaaACACTGAAGTGGAAgacgaagaaaagaaagatgaaaGTGAATCTAAATCGCACGAAGAcggtgaaaaaattatatccaatttatcAGAGAAACCGCATGAATGTACAATATGTACTCGATCTTTTATATCGCAAATTGGCTTGCAAAATCACTTGTGGTCGCATTTACCTAAAGAGAGAAGATTCGACGGAAAGCCTATTTTACAATCTCAACACGTTTATTCTATAAATGGTGTACTTCATACGAATAGTGATAACAATTCGTCCAGCAACTTCATCTGTCCAATTTGCAGTAAAAAGATTTCTACAAAGGGAAATCTGAAAGTGCATTTAGAGACTCACAGGCCTAAAGGAAAGTACGGCTGCGACATATGTGGAAGAATTTTCAAAACTCAATCGAATCTGTTCAGACACAAGGAGTACCACAGCGGCGTACAATTTCCATGTAATGTATGCGGGAGAGTGTATCCAACGAATTCAACGTTACGTGCCCATAGCATAACGCATTCGGACTTGAGACCGCACGCATGCCCGCTTTGTGATAAGACATTCAAGCGAAATCAGGATTTAAAATTCCACATAAATCAGCACACAGCGATCAAGTGA
- Protein Sequence
- MVCSTCIKRLEGVHRFAMMAYRTQEKLRSQLYGNIDNTNPVQEDEIQNIKDMQDTIKKAEDRGLLHSILTKGAIEILTEDELGSQESNFQEVKRCTPNMEEMEVKVDPMLFLQCGMEQSTSEASDSSDNEEEITRTHTPEPLPLMNKNTEVEDEEKKDESESKSHEDGEKIISNLSEKPHECTICTRSFISQIGLQNHLWSHLPKERRFDGKPILQSQHVYSINGVLHTNSDNNSSSNFICPICSKKISTKGNLKVHLETHRPKGKYGCDICGRIFKTQSNLFRHKEYHSGVQFPCNVCGRVYPTNSTLRAHSITHSDLRPHACPLCDKTFKRNQDLKFHINQHTAIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00016886;
- 90% Identity
- iTF_00016886;
- 80% Identity
- iTF_00016886;