Basic Information

Insect: Acromyrmex echinatior
Gene Symbol: bab2
Assembly: GCA_000204515.1
Location: NW:1373189-1438007[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.1 4.7e+03 -3.3 0.1 11 17 12 18 11 21 0.87

2 5 4e-13 6.1e-10 37.9 0.0 1 39 394 433 394 437 0.90

3 5 2.5e-13 3.8e-10 38.6 0.1 2 39 449 486 448 489 0.94

4 5 9.4e-19 1.4e-15 56.0 0.0 1 45 503 548 503 548 0.96

5 5 6.5e-19 1e-15 56.5 0.1 1 42 555 597 555 598 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.1	4.7e+03	-3.3	0.1	11	17	12	18	11	21	0.87
2	5	4e-13	6.1e-10	37.9	0.0	1	39	394	433	394	437	0.90
3	5	2.5e-13	3.8e-10	38.6	0.1	2	39	449	486	448	489	0.94
4	5	9.4e-19	1.4e-15	56.0	0.0	1	45	503	548	503	548	0.96
5	5	6.5e-19	1e-15	56.5	0.1	1	42	555	597	555	598	0.97

Sequence Information

Coding Sequence: ATGAAGGTCGCGCATATTATCGAGATTTGTCGGGCGATAATGAACGGCGGCATGGCCGGGCAGCACTACTGCCTGCGTTGGAACAACTACCAATCGAATATGACGTCGGTGATGCACCAGCTCCTGCAGACCGAGGCCTTCGTCGACGTCACCCTGGCGTGCAATGAGGCCTCATTAAAGGCGCACAAGGTGGTGTTGTCAGCTTGCAGCTCCTATTTCCAGAAGCTCCTGCTATCGAACCCTTGCAAACACCCGACAATCATCATGCCGCAGGACGTCTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGCGAGATCGACGTTTCGCAAGCGGAGCTTCAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGTCTGAGCTCGCCGCCGAGAGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGAGATACAAGAGACCCAGAATCGAGCGGCCCACATTCGAGCCGCGTCCTACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCTAACGATTACAGCCGTGACAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAgacagcaacagcagcagtaGCATTGGAAACTTGCcaacgtaataataataacaataacaacaacaacggTAACGGCACGAGTAACAACAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACTCAACCTACCCCACCCAGCGCCACCCTGGTCGGCACTACTATCACCCACTTGAGGGATCCGGATCATCATTCTACagAGATTCAAAATTGCGACAGCGTCAAGATCAAGTTCGAAACGCTGCACACGATGGACTCCTCGGACACGATCGATATAGATAGCCACATGTCGGATCGGGCGAGCGTAAGCTCGAAAAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGCTGTTGGGACTGATGCCATCGGGAAGCTCCGGTCAGTCAGACTCGGGTGAGAATAATTCGAGGGGGCACAGTGGACAGTCCAGCTCGCACCATCACGGTTCAAAGTCATGGACGCAGGAGGACATGGACGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACAAAAGCTTCGgcaacatTCGGTATTCCCTCAACGACATTATGGCAACGGGCGCATCGATTGGGCATCGATACACCGAAGAAAGACGGCCCTACGAAATCCTGGAGCGACGAGAGTTTGAACAATGCCTTAGAAGCGTTGCGTACCGGTTCCATTTCGGCTAACAAAGCGTCCAAAGCATATGGCATACCTTCTAGCACGTTGTATAAAATCGCCAGGAGAGAAGGTATCAGATTGGCCGCACCGTTCAACGCGAGTCCCACTACCTGGACACCCTCCGATCTGGATCGCGCTTTAGAAGCAATAAGATCTGGTCAGACGTCCGTACAGAGAGCGTCAACCGAATTCGGTATACCTACGGGAACTCTTTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGTAGAAGCAATCCTACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCCGTCAGGTTAGGACACATGAGCATAAATCAAGCGGCAATCCATTATAATCTGCCGTATTCGTCACTATACGGACGCTTCAAGAGGGGCAAATACGAGGAACCCGTCGTCGGTGATATCTCGCAGGATGGCACCAGTCCACATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGTTGA
Protein Sequence: MKVAHIIEICRAIMNGGMAGQHYCLRWNNYQSNMTSVMHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEPRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPSDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_00015472;