Basic Information

Insect: Acromyrmex charruanus
Gene Symbol: -
Assembly: GCA_017607545.1
Location: JAANIC010005341.1:5816738-5824304[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.6 2.4e+02 1.6 0.1 2 17 75 90 74 91 0.88

2 19 0.24 12 5.6 7.5 2 23 316 338 315 338 0.97

3 19 0.03 1.5 8.5 2.2 1 23 387 409 387 409 0.97

4 19 0.89 46 3.8 1.1 1 23 458 480 458 480 0.97

5 19 0.043 2.2 7.9 0.1 1 20 528 547 528 549 0.92

6 19 0.00088 0.046 13.3 1.8 1 23 589 611 589 611 0.98

7 19 2.9e-05 0.0015 17.9 0.1 1 23 658 680 658 680 0.96

8 19 0.0028 0.14 11.7 0.1 1 23 686 708 686 708 0.97

9 19 1.5e-05 0.0008 18.8 0.2 1 23 751 774 751 774 0.96

10 19 0.0022 0.12 12.0 0.6 1 23 780 803 780 803 0.96

11 19 3.2e-05 0.0017 17.8 2.5 2 23 811 833 810 833 0.97

12 19 0.00012 0.0061 16.0 0.0 1 23 841 863 841 863 0.93

13 19 0.27 14 5.4 0.1 1 20 923 942 923 942 0.95

14 19 0.12 6 6.6 0.4 2 23 962 983 961 983 0.96

15 19 1.4e-06 7.2e-05 22.1 1.0 1 23 996 1018 996 1018 0.98

16 19 9.3e-05 0.0048 16.3 3.1 1 23 1040 1063 1040 1063 0.94

17 19 0.0016 0.084 12.4 1.3 2 23 1122 1144 1121 1144 0.95

18 19 0.00038 0.02 14.4 1.6 1 23 1162 1185 1162 1185 0.93

19 19 0.0038 0.2 11.3 0.3 2 23 1279 1301 1279 1301 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.6	2.4e+02	1.6	0.1	2	17	75	90	74	91	0.88
2	19	0.24	12	5.6	7.5	2	23	316	338	315	338	0.97
3	19	0.03	1.5	8.5	2.2	1	23	387	409	387	409	0.97
4	19	0.89	46	3.8	1.1	1	23	458	480	458	480	0.97
5	19	0.043	2.2	7.9	0.1	1	20	528	547	528	549	0.92
6	19	0.00088	0.046	13.3	1.8	1	23	589	611	589	611	0.98
7	19	2.9e-05	0.0015	17.9	0.1	1	23	658	680	658	680	0.96
8	19	0.0028	0.14	11.7	0.1	1	23	686	708	686	708	0.97
9	19	1.5e-05	0.0008	18.8	0.2	1	23	751	774	751	774	0.96
10	19	0.0022	0.12	12.0	0.6	1	23	780	803	780	803	0.96
11	19	3.2e-05	0.0017	17.8	2.5	2	23	811	833	810	833	0.97
12	19	0.00012	0.0061	16.0	0.0	1	23	841	863	841	863	0.93
13	19	0.27	14	5.4	0.1	1	20	923	942	923	942	0.95
14	19	0.12	6	6.6	0.4	2	23	962	983	961	983	0.96
15	19	1.4e-06	7.2e-05	22.1	1.0	1	23	996	1018	996	1018	0.98
16	19	9.3e-05	0.0048	16.3	3.1	1	23	1040	1063	1040	1063	0.94
17	19	0.0016	0.084	12.4	1.3	2	23	1122	1144	1121	1144	0.95
18	19	0.00038	0.02	14.4	1.6	1	23	1162	1185	1162	1185	0.93
19	19	0.0038	0.2	11.3	0.3	2	23	1279	1301	1279	1301	0.96

Sequence Information

Coding Sequence: ATGGACGAGAACGTGGTGGAGATTGAAAACGAGGAGGCGATCGAGAATATGAAGAATGTCTGCAGACTGTGCCTTTCCACGGATGGATCTAGAGCTTCGGTGTTTGGAACGCaggaggaagagaaggagTCGTCGCTGACGAAGAGAAGCGTGTCGCTGGTCGCCAAGATTCAGGCCTGCCTGTCGATCCAAatttcgACAACCGATAAGCTGTCCACATGGATATGCACAAATTGTGTGAAAAGCGTTAATCAATGGTATACCTACAAGGAATCGTGTTTGCGTTCCCAGGACAAATTACAAGAATGGCTGGCAAATCAATTGCAGTCGAATCCTACAGTTGTTAGGATCAAAAATGAACCAATGGACATAGATTATGAAAATAGTGTAGAAATTATAGAGGAGACTGTCAATAATATAGAAGTTATCAAGGAGACAGCCAATAATGTAGAAGTAATCGAGAAGACTACTAATAATGTAGAAGTTGTCGAGAAGATCATCAATGATGTAGAAATTGTCGAGAAAACCATCAATAATCATCCACCAGTTCAATCAGTGGAAAACAATGAAgctaataatgaaaaagtgcAAGATGTAGATAACAGCGATGTTAATGATACTGCGAATGATACTAACAAGGACCCCGAATCAATCTCGTCCGCAACGGAAAAGGAAACTGATAAGGAAAAGAATCAAGCGGATCAGCAGGATTCTATAGTTCTGTGTTCCATTAAAAGCGAACCGCAAGATGAAGACGATACCGATGGTACCATAGAAATAGAATCGAATAGCAGTGAATTGAATGCCATGGCAGTCGATGAGGCAGAGGACACTGTCATGGAGGCTGATTCCACGCAAAAGTCTAATGCGGCTGGCGCATCGCCTAAGAAGAAATTCAGACGCGGTCCTCATACTCACTTCAGAGGAACGCGTGTTTTTAAGCAGAAGTGCACGCACTGCCAGATATTTTTGCATTCTAAATACTCGTACATGAAACATATGAAGAGGTTTCACAGTAAAGAAAATGGCATTGGAAATTCAGAGATGCGGAACGACGACGAGGAGATGATAGAGGATCTAGAAGATGAATTGATCAGTATGGAGAAGGACTCGCCGCTGACGCAAGTTCAACAGGACATTATTAGTCAACTGAAAACTTTTTCTTGCTACTCTTGCGAGCAGACATTTAATGATCGACGCAGCACTCTTTCTCATATACGTCAACATATGCCGGATCTAAGACCATACACATGTATTGCTTGTTTGACAGAATTTCCAGATCGATCAATGTATCAGTTGCATTGCGGAGCTTCCTTCGAATGCGCCATGAAGATTGCCCTAGTTGTACCGAAACACGGTAGCGAGCGATATTTTACATGTAACATGTGCTTGCGTTCAATGCAAGGTAGAAAGGAGTTACTCAGTCATTTGTCGAAGCATTCTGATAAGCAGTATGAGGAGATGATGTCATCGTCAACGCGAGCCCCGCCTAAACTGAAGCCGATGGCACCGTTGCCATCCTCGAAAAACAGCACTCTGCATAAGAGCGGACCTTATAAGAATGGTGATCCAAAGCATAATCATGCCTGCGATCTATGCGGCATGATCTACCGATATCGGCCCAATATGGTCAAGCACAGAGAGGTATGTGCGCGATTGGACCCAGACAACAGAATATTGTACAAGTGCGTGCATTGTTACATGACGTTTCTTGTGTTTAAGAAGTTCCATTATCATATTACAGCCGatcataagaaaaaagattttacttgTTCTGAGTGCTTTTCCAAATTCCGATCACCCAGCGATTTTGTAACTCATTACGAAACTCATCGCACGACAATGCAAGATAACCAACAAGAGCAGTATGACAGTACCTCGCAGAATACAGTTCAAACACCATTGAAGGAACGTAATGCTTACGAAACAAATGTCAAATCAAGAGTTAGTTCACGAATATCAAATCAGCAGTATCCTTGCCCTCTCTGTCCCGAGAAGTTCTCCACGAAGGTTGAACTGAACGAGCATCGGACTCTTCATCTCAAAATGAAGATATATTCGTGCGCCATTTGTCGTAGCTTATTCAGCAGCGCCGGCTCCTTGGAGATCCATATGAAGGATCATGGTATCGAAGACGCGCACGAAAGGGATGCCAATGTCTCCTGTGTGGAATTCGGCAGCTTGGATGAAGATGTGAGGATTGAGAAAGATTTGGTGAACATCAGTAGCATCTCGGATCCTGGTCAAAATCATGAATGTGGCGAATGTGGTAAGGTACTATCCAGTTACGCTAATCTTCGACGACACGCTAAAATTGCTCACCGAAACACTAAGATCTATGATTGTGTCGATTGCTCGCGAATGTTTATGCGTAAAGATTTGTATGATACTCATATGGAGATCAAGCATAATTCTAAGAACACAATGCTGCAGTGTCCGCAATGTCCCAAGAGTTTTGTCTTCCATTCGAATTTCACTTATCACTTCCGTACTGCTCATCTCCAGAAATCACAAACCGGTTATGCCTGCGATATCTGCGGCAAAGTCTTTGTTGAGGAAGCgtctttaaaaatacataggGGCTGGCACAATCGCGCCAATTCACGTTTGAGTACTCGATTTATATTGGGAGATCAAAATACATCTAATGACGCGCAAAAGGAATCAAGTAGCGTTGAATCTGTTGAGAATTCAGAACGGCCGGCGAGAGCACGAAAATCTTTCCCTAATCCACCACTTCAATCCTTAACAAAGACATCAGAGAATTACCAATGTCAAGTATGCAATGACAAATTCAATGATGTCATAGGACTAAGAACCCATTTGTGGGACGTCCACTGCGCTCGCAACAAACCAGAGAAGAGTTTCTCTAATGATGAGCTTCAATGCGAACTCTGCACGAACATTTTTCCCGATAAGGGAACCCTAGCATGTCATATGCAATGGCACAAGGCTAATCCTATTCTCAGTGACATACAAAAAACGTTCTCCTGCGAAATATGCGGCAGGTCTTACAGTTCGAAGAAGGCTCTATGGAAGCACAAGAGACTTCACAAAGCTACCGCTGTAGCATCAATTAAATTCCAATCTTTGGCTAGAAAACCGATGGCTACACAATTCCTATGCAACTTCTGTCGCAAAGTCTTTTCAAGCAATCAATCTTTGCAACGGCACAAACTCACTTTCCACAGTGATCCGCTGAATCAACAACGTGCGCAGCAACAGTTATGCAACAGCAGTCAATTATCGTCATTTGATGAACCAAGAACAAAGCGCATGAAACCagacattgaaaatgataattcGCAGACCAAATTGTCGCCTTTCGCCATGGACTTCGCTGGCGAAAGAAGGAAACCGGTCATGTGCCATGTTTGCAAGAAAATGTTCCCTAACATGAGCGTGCTGTACAAGCATAAGCAAATGGTTCACAAACGATCAAGAATACCCGAGTGTATACCGATGTCGACTCAGGATGGCAAATTTTCATGCAACATCTGCTTCAAGAAATTCCCCGGTCTATCAAATCTGCGAcaacattttacaattaaacacAAGAAGACGTCCGAAACCAGCAGCAACGCATCAATGGCAGTGAGCAATGAGAGATTGTCGCTCCCGACACCCGAACGTCCAAAGGAGGGAACCTATGAAGTGGCCTACAATAACGTGATGTACAGCTGTAAATTGTGCAAGCAGTGTCATGTTTTCAATAAGGATTCTATCATAAGTCATATTACCAATGTGCACAACGCAGTGTATCAGGCCGATAGCAAGACGTTCCATAGGGAAATCACTCTGAGCACTTACGTAGTAAAGGACGCGATCGGAGCTACTTGTCCGCGATGCGATGTTAAATATCCTAATAACAGGGCTCTGAAGATACACTATATTAAGTTCCacgaaaataatgat
Protein Sequence: MDENVVEIENEEAIENMKNVCRLCLSTDGSRASVFGTQEEEKESSLTKRSVSLVAKIQACLSIQISTTDKLSTWICTNCVKSVNQWYTYKESCLRSQDKLQEWLANQLQSNPTVVRIKNEPMDIDYENSVEIIEETVNNIEVIKETANNVEVIEKTTNNVEVVEKIINDVEIVEKTINNHPPVQSVENNEANNEKVQDVDNSDVNDTANDTNKDPESISSATEKETDKEKNQADQQDSIVLCSIKSEPQDEDDTDGTIEIESNSSELNAMAVDEAEDTVMEADSTQKSNAAGASPKKKFRRGPHTHFRGTRVFKQKCTHCQIFLHSKYSYMKHMKRFHSKENGIGNSEMRNDDEEMIEDLEDELISMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGSERYFTCNMCLRSMQGRKELLSHLSKHSDKQYEEMMSSSTRAPPKLKPMAPLPSSKNSTLHKSGPYKNGDPKHNHACDLCGMIYRYRPNMVKHREVCARLDPDNRILYKCVHCYMTFLVFKKFHYHITADHKKKDFTCSECFSKFRSPSDFVTHYETHRTTMQDNQQEQYDSTSQNTVQTPLKERNAYETNVKSRVSSRISNQQYPCPLCPEKFSTKVELNEHRTLHLKMKIYSCAICRSLFSSAGSLEIHMKDHGIEDAHERDANVSCVEFGSLDEDVRIEKDLVNISSISDPGQNHECGECGKVLSSYANLRRHAKIAHRNTKIYDCVDCSRMFMRKDLYDTHMEIKHNSKNTMLQCPQCPKSFVFHSNFTYHFRTAHLQKSQTGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGDQNTSNDAQKESSSVESVENSERPARARKSFPNPPLQSLTKTSENYQCQVCNDKFNDVIGLRTHLWDVHCARNKPEKSFSNDELQCELCTNIFPDKGTLACHMQWHKANPILSDIQKTFSCEICGRSYSSKKALWKHKRLHKATAVASIKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLTFHSDPLNQQRAQQQLCNSSQLSSFDEPRTKRMKPDIENDNSQTKLSPFAMDFAGERRKPVMCHVCKKMFPNMSVLYKHKQMVHKRSRIPECIPMSTQDGKFSCNICFKKFPGLSNLRQHFTIKHKKTSETSSNASMAVSNERLSLPTPERPKEGTYEVAYNNVMYSCKLCKQCHVFNKDSIISHITNVHNAVYQADSKTFHREITLSTYVVKDAIGATCPRCDVKYPNNRALKIHYIKFHENND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182140;
90% Identity: iTF_00016844;
80% Identity: -