Aorb011471.1
Basic Information
- Insect
- Acrocera orbiculus
- Gene Symbol
- -
- Assembly
- GCA_947359355.1
- Location
- OX375759.1:25686268-25687765[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.089 2.9e+02 1.5 0.8 9 46 196 235 190 241 0.76 2 5 0.00011 0.35 10.9 0.3 22 44 267 289 262 297 0.86 3 5 0.086 2.8e+02 1.6 0.0 21 44 294 317 291 321 0.85 4 5 0.00043 1.4 9.0 0.0 21 43 322 344 320 350 0.91 5 5 0.0094 31 4.7 0.0 21 45 350 374 345 378 0.89
Sequence Information
- Coding Sequence
- ATGGATTTTAAAATAAATTTTGATAAATTATGTCGAATTTGCCTTAATGAATCGGATAATTTAATATCGATATTTAAACCAGGAAAGATATGTAATAAAATTATTTCAATATCTGACATGTTGCGTGAATTAACATCATTGGAGATAGAAGAGGATGAGCTTACGCCATCTACAATATGCAATGTTTGTGCAATAAGGCTAGCTAGTTCGTATAGTTTTCGGGCAACATGTATAAATGCTCCAAATTTATTAAGAAAAAAATTGGAGAATATTGTAATATATAAGGAGGATAATGGAGAAGATGATGAAGATATGGAAACATTATATTTCTATGAAGAAGATAGTGAAGAAAATGATAATAATTCAGAAAGCTTGATAACAACAGAAATTCCTGATGAGGAATATTTTGTAGTAGAATTAGGTGTGAAGGAAGAAAATATGAACTTAGAACAAATTATTGATATTTCTGAAGACAATGAAATTGAATTTCTTAATTCTGATACAAATTCTGTTTATTTTGATAATTGTGTTGAAAATAATTCAAACGGTGGTAGTACCTTAGAAAAAATCGATATTAAAAGAGAAAAACCAAAAACACGAAAAAGACGTCGACGTTCAAAAAATATACCTGGACCaccctttaaatgtgaacattgtaataaaattctaagtaatcatggttcctttaaatatcatatgcaattacattctgatcgaacaccatatttatgtagtaattgtggtgaaggctttaaaactagaaatgcatatgatggacatatgacaacacataatgaaaataatccacatacatgtaaaatatgtggtaaagcttataggcaagctggttcattacgatgtcatatgcttactcatactggtgaaaaaccattccgttgtgaaatatgtggtaaaggaatgacgcaaagatctggctttaaGaaacatatgttaattcataccggtgaaaaaccacttacatgtgatatatgtggaaaaaagtttagatattcaagtaatctcataacacataaaaggggtcatactgctgaaagaccttttttttgtcagGTTTGTGATATACGTTTCGCAGGAAGTGGACAGCTTAAGCGCCATCTACTAATCCATACTAAAAATGAACTATTGTTTAAAACAATTAAAAAAGAGGTCTTCATTAAAACTTCATTTAAATACTCATGCTGA
- Protein Sequence
- MDFKINFDKLCRICLNESDNLISIFKPGKICNKIISISDMLRELTSLEIEEDELTPSTICNVCAIRLASSYSFRATCINAPNLLRKKLENIVIYKEDNGEDDEDMETLYFYEEDSEENDNNSESLITTEIPDEEYFVVELGVKEENMNLEQIIDISEDNEIEFLNSDTNSVYFDNCVENNSNGGSTLEKIDIKREKPKTRKRRRRSKNIPGPPFKCEHCNKILSNHGSFKYHMQLHSDRTPYLCSNCGEGFKTRNAYDGHMTTHNENNPHTCKICGKAYRQAGSLRCHMLTHTGEKPFRCEICGKGMTQRSGFKKHMLIHTGEKPLTCDICGKKFRYSSNLITHKRGHTAERPFFCQVCDIRFAGSGQLKRHLLIHTKNELLFKTIKKEVFIKTSFKYSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00014246;
- 90% Identity
- iTF_00014246;
- 80% Identity
- iTF_00014246;