Arep003003.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acrobasis repandana
Gene Symbol
-
Assembly
GCA_963576875.1
Location
OY756216.1:8225159-8229764[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.069 6 8.4 3.4 2 22 191 211 190 211 0.95
2 16 3.3 2.9e+02 3.1 1.0 1 23 309 331 309 331 0.82
3 16 0.57 50 5.5 0.3 2 23 466 487 465 487 0.96
4 16 0.094 8.2 8.0 0.7 2 23 562 583 561 583 0.96
5 16 0.059 5.1 8.7 0.7 1 23 591 613 591 613 0.97
6 16 0.12 10 7.7 3.4 1 23 652 674 652 674 0.95
7 16 2.5e-05 0.0021 19.3 2.0 1 23 683 705 683 705 0.99
8 16 0.094 8.2 8.0 2.4 1 23 787 809 787 809 0.99
9 16 0.33 29 6.3 0.3 1 19 865 883 865 885 0.97
10 16 0.84 73 5.0 0.1 2 23 894 915 893 915 0.95
11 16 0.015 1.3 10.6 0.4 1 23 981 1003 981 1003 0.92
12 16 0.014 1.2 10.6 1.1 1 23 1009 1031 1009 1031 0.96
13 16 0.0065 0.56 11.7 2.6 1 23 1120 1142 1120 1142 0.97
14 16 0.00016 0.014 16.7 1.4 1 23 1148 1170 1148 1170 0.99
15 16 0.3 26 6.4 2.1 1 23 1261 1283 1261 1283 0.96
16 16 0.0027 0.24 12.9 3.7 1 23 1294 1316 1294 1316 0.98

Sequence Information

Coding Sequence
ATGGGATTGCAGTACATAGAGCGGGATACAATAAGTTGTAACAGCGACTCTAACGACGCGTCGACTTCCGACTTATCTACCAAGAAGTCGCAGTTGGCACAAAATGTGCAACATTCACCGAATGCTTCAACGGAAGACGGCAagagtcaaaaacaaaatagaaaGATACCCAGACCAATACCCCAGCTCATACCGCTTAATGCGTCCACTCCGAACCAGTCCAAATCCACCGGAGAGCCACCGTgcaagaaatttaaagaaataccaTCTAACGAGTCCAATGACTCCAACTCCGACAGTAAACTTGATGCCCTACCGGCTGACATCACTTTGACCCCGGTATCTAATATGcctacaaaagaaaatatagcgCGTAAGAAAAATGAGTCTTTCTTCGATAGATTAAAAGAAAGAATACTAACAGAGACTGGTGAAGAAGGATCATTGAATTGTAAAAATTGTGGATTCGTGAGTAAATGTCTCTCTGAACATTCTGTACATGAAAAAACCTGTACTGCTCAATTGAATAATGTCGCCAAGAATACGTTACTACCAAATTTAAGCTCAACACGATGTCAATACTGTAGACACAGATGCAAATCTAGTGCAGACCTGTACATTCATATGCAGACATGTAGAAAGAATGAAAGGAAGGGCGATCAGCTAGTGGAAATGAGAAATCATGACAGTAATGAAGTTTCTTCTTCAAACCAAGATCGAGACGCTGAGCCTCATCCCATggaaaatgttgtttttgtttggAACAACATAAACCACGATGCTAATAATTTTGAAACTCCACTTGGAATTAACATCAATGACGATTCTACACTTCCGATTCCACACAAATCATTCGAAAATGATATCGTAGACGACAATGAAAGCATGAACTTGTCGCCAAGCCAGGCTGTTGGAAAGAGAGTATTTAAATGTCCACACTGTCCGTTTTGGGCTTCAACAGCTTCGAGATTCCATGTTCATATAGTAGGCCACCTAAACAAGAAACCATTTGAATGTTCGCTTTGTAAGTACAAATCAAATTGGCGGTGGGACATTACTAAAcatattaaactaaaatctgCTAGAGACCCAGAGCATAATGAAGCTAAAGTTTTAATGACTGACGAAACTGGAAGGAGAAACtacacaaaatatagtaaatttCTTGCAATGCCAGTTTTAAATGAATATGGTGAAAATGAGTTTCACTATGTTGATCAAAATGCTTCAGCCGATCCATCGCTTGAAGGTCATGATTCTATAAACGAAATTAATGACATGCATACTTCGTACGAAATGCAACCGCTAAACTTGCAGACTCAGCATTTCCAGCAAAAATATGATTTGATGGATGGCAGAATGATTGACGCCAAGAAACCTAAGAAAACTTTATGGAAGTGCAAAAAATGCAATTACAAAGACCCATCTAAAGAAGCATTATTGGAACATGTACGAGAGCACGCTAAAATAGACAGTGGTTCAGGCAATCAGCAAAACAAGAAACTAGAAAACCTACCAGATCCAGCGGATTTAGCATATCGCTGCGGACACTGCAATCAACTATCAAATTGGAAACATGTTATACAGAGACACTGCCGATTGAAGCACGATGGAATCATCAAGGTCATTACTACTATCAAACCAAAACCAGAAACATCGTCTACGACTGAAATTACTAGCGATACATGCACAAAGTGCCCATTTAAATCCACTGACAGAAAAGTGCTAATGGCGCATTTACAGCAACATCAGCCTTCTCCTGACTcaatatttaaatgttacttCTGTCCGTTCTTCGTCAAAGATGAAAAAGAATTAATCCAGCATCTGCTTCTACACGGAATTACAGAACCAGAGGAATATATCGCAAAAGCTATGGGAAGTAGGTCGCCCTTGCCAGACCCTATTATCTTGCCAGGACCATCAGGATCGTCGGTCACCTCCACCAAACGACACAAGTGCACAGAATGCCCCTACGAAACAAACAGTAAATCACAGTACATGTATCATGAACAGTTTCATCGTGCACCAAATGAAACTAGGGAATATAAATGCCCGGAATGTAATTACAGCGTTTCTAAAAGGCATTTACTTAATCAGCACTTGCGAGTGCACGGAATCATTACGAAAAAATCAGAATCGGAAGCAGAATTAGAAGCAATGGTAACTGATACTAACAAAATAGAAAAGTCGGCTGATATATCAGTTCTGGAAGAAATACCACACGTGTGGGTATCAGCCAAAAATGAATTCCACAAAATGTACAAATGCCGATTCTGTTCATACGTAAATTCACAGAAATGCAAAATTCCGAACCATGAAAAAATCCACTGCATAGAAAACAGCGAAATAACTGTTTACAAATGTTGGGAATGCAAATTCACGTGCGACAACGCAGGAAGATTATCCGAACATTCGAAAACACATGGTGAAATCTACGGCCGAATTTATTGTCCTGTCGAACCTGACGTGCCTGATGAAGAACAAATTGCCAAACTACGTAAAGTGATCGAAGTTGAAAAAACAAATACTCCAGAAGAGTCCCAAAAGGAGGAAATGCTAGCAAGTGAGAACAAGGAAGTGAAGATCTTATACTTCTGCCAGAAATGCCCGTCTAGGTTCTTTACAGAAGATGACTTGGCTGCTCACGATACAGGCCATAAAGTAAACTTTTATAACAAGTGTAAAAGTTGTGACTTTTCTGTTGCTGAAGAAGAAGACTTGCAAGATCACGCAACTGTTCATTCGGACGAGTatcacactaaaacaaaaatgttaaagTTTATACATAACATGCATCCAGCTCACACTCAACCTCGATTGGAACTTGTCCATTGTCCAATAACTTCTGAAATCACTTGGATTGTGTCGACATCAAGCAAAAACTATGACGAGACTAGTATCAGAAAGTCATGTGACACCAGGCACGCGCCCAAGCAGTATCTTTGCAAAGAATGTCcagcgaaatttttcaaaaactcagCTCTCACCTATCACTTGGGCCTTCACGGGAGTGATGGGGAACATAAGTGTAAAAAATGTAGTTACGCTGTTAAGAACATAGGCAACTTGGCTAAACATGAATTACTACATGAAAACGAGAATAAACAGCCAGGCGAATATGACTCCGGTGATGATAtggactataaaaatataccacTGTCAGGAACAGACTTGTTTCAAAGGAAAACTGAAGCTCAGAAGCGCGTTTTGACCGATAAGGATAAACTTGTAAAGCCTAATGATCATTTTCCGCCAGTACTACAAGCTGACCCACAATTTGGCTATCTTATGCACGGTAATCCTGAATTTATATATCCTACTTACCTGAAGAATGGGAGACAAAAAGAAAAACGTTACAAGTGTCATAAGTGTCCTTCGGCTTTTGAAAAACGAGAACAATATAAGATACACTTATCGTTACATGGATCCAAGCAAAGATACAAATGCGAACTATGTGATTACTCAGTAAAGTACTACGCAAATTACGTGCAACATATGAGAAAACATCAAATGAATGATGAGGCTCAAGCTGAGAGGAAAAAAGGCGATAATGGTTTTACAGAAACAGAGGTCCAAGAAACTAAACAAGACGATAGTGGTGATAATATAAAACTGGCAATTAAAACGATGCCAAGGGGAGCAGCCAAGAGCGACTTCCAGCAATTCTCCATCAGCGATCAGCAAACCCTCCGCCTGCTTCAAAGAAGACGTTCCATAAATAGCGCTGGAAAGGATCCAAATGCAAACGAAACGTTGCCGCCTTCCAACCGAAAATTGCACATGTGCTTATTATGCCCGTACACTAATCAGCGACAGGACGCCTTGACAAACCATTACAGGAGACACGATGACACAGACATTCTAAATGCAGGGACACACAAATGCTCTTACTGTGACTTAGTGGTTGTACAATCACATTTCCTTCGTGAACATCTAAAAACTCACTTCAGTTATCAGAAAACACTTACTGCGGAGTGTTTCGTAGCCAACAAAGATGTGAGCTTTACTATAACTCAAATAGACGATGAAAACTTGTCTACAGATCTCAAGTTAGATATACGAAACAAGAACTACACATGTAATGAAGACAAAatgtatgttaaaataaaaactggagAACTTATGGTAGAGTAA
Protein Sequence
MGLQYIERDTISCNSDSNDASTSDLSTKKSQLAQNVQHSPNASTEDGKSQKQNRKIPRPIPQLIPLNASTPNQSKSTGEPPCKKFKEIPSNESNDSNSDSKLDALPADITLTPVSNMPTKENIARKKNESFFDRLKERILTETGEEGSLNCKNCGFVSKCLSEHSVHEKTCTAQLNNVAKNTLLPNLSSTRCQYCRHRCKSSADLYIHMQTCRKNERKGDQLVEMRNHDSNEVSSSNQDRDAEPHPMENVVFVWNNINHDANNFETPLGININDDSTLPIPHKSFENDIVDDNESMNLSPSQAVGKRVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYTKYSKFLAMPVLNEYGENEFHYVDQNASADPSLEGHDSINEINDMHTSYEMQPLNLQTQHFQQKYDLMDGRMIDAKKPKKTLWKCKKCNYKDPSKEALLEHVREHAKIDSGSGNQQNKKLENLPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTIKPKPETSSTTEITSDTCTKCPFKSTDRKVLMAHLQQHQPSPDSIFKCYFCPFFVKDEKELIQHLLLHGITEPEEYIAKAMGSRSPLPDPIILPGPSGSSVTSTKRHKCTECPYETNSKSQYMYHEQFHRAPNETREYKCPECNYSVSKRHLLNQHLRVHGIITKKSESEAELEAMVTDTNKIEKSADISVLEEIPHVWVSAKNEFHKMYKCRFCSYVNSQKCKIPNHEKIHCIENSEITVYKCWECKFTCDNAGRLSEHSKTHGEIYGRIYCPVEPDVPDEEQIAKLRKVIEVEKTNTPEESQKEEMLASENKEVKILYFCQKCPSRFFTEDDLAAHDTGHKVNFYNKCKSCDFSVAEEEDLQDHATVHSDEYHTKTKMLKFIHNMHPAHTQPRLELVHCPITSEITWIVSTSSKNYDETSIRKSCDTRHAPKQYLCKECPAKFFKNSALTYHLGLHGSDGEHKCKKCSYAVKNIGNLAKHELLHENENKQPGEYDSGDDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGDNGFTETEVQETKQDDSGDNIKLAIKTMPRGAAKSDFQQFSISDQQTLRLLQRRRSINSAGKDPNANETLPPSNRKLHMCLLCPYTNQRQDALTNHYRRHDDTDILNAGTHKCSYCDLVVVQSHFLREHLKTHFSYQKTLTAECFVANKDVSFTITQIDDENLSTDLKLDIRNKNYTCNEDKMYVKIKTGELMVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00720882;
90% Identity
iTF_00012500;
80% Identity
-