Arep029432.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756243.1:7861499-7875745[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0016 0.14 13.6 1.8 2 23 327 349 326 349 0.92 2 14 1.2 1.1e+02 4.5 8.1 2 23 357 378 356 378 0.97 3 14 4.5 3.9e+02 2.7 5.7 1 23 382 404 382 404 0.94 4 14 0.0068 0.59 11.6 1.2 1 23 409 432 409 432 0.95 5 14 0.13 11 7.6 0.1 3 23 439 460 439 460 0.95 6 14 0.067 5.9 8.5 1.2 1 21 468 488 468 489 0.94 7 14 1 88 4.8 0.1 3 23 497 518 496 518 0.90 8 14 0.0063 0.55 11.7 0.9 3 20 527 544 525 546 0.94 9 14 0.057 4.9 8.7 0.3 2 23 552 574 552 574 0.92 10 14 0.00062 0.054 14.9 5.4 1 23 580 602 580 602 0.94 11 14 7.3e-06 0.00063 21.0 0.2 3 23 657 677 656 677 0.97 12 14 2.1e-06 0.00018 22.7 1.4 1 23 683 705 683 705 0.99 13 14 6.9e-05 0.006 17.9 1.4 1 19 711 729 711 733 0.93 14 14 0.00062 0.054 14.9 3.7 1 23 739 762 739 762 0.97
Sequence Information
- Coding Sequence
- ATGTGGTcggttaatattaaaaataacgatAATGCTGTAGCTTGTAGAGGTTGCCTCGCTACTGACGTGCGATTATGTGATATTCATGAACTAAATTTGTCTGAAGCCTATGTTCAGCTTATTGGAATTTCGCTACAAGATCACTTCCCCCACCACCTTTGTGTGTTCTGCCGTACGCTGCTGGTAAAGTTCCTGTCTTTTCGAGACAAATGCCGGAGGTCACAAGACATACTGGTTGATGCAGAGCTTCAGGGAAGATGTataacgCCCAATACTTTACGAGAAATAGGCCACTGGAATTTCAAACCACCATACACACAAATAACAATCACAGAAGCGAATGAATATGTAGAATCCGCAGTAGATGCAAAGCTAGATATAGGATTCAAACAAGAAGTTGATTTACCTAATGACGTCTtgtattttaaagaagataaggATTTAAGTGTAGATAATGATGATTTCGGTGATGATAGAGACGACGATGATGTAGTAGAGCCCTTAGAAATATTCGCTGATGACTGCATAGATGTAGAAATTcctaaaattaaatctaaaaagaaAAGCAAAAGATTAGACGACAACTTAGATACAGCCCGTAGAGTGACTAGAAAGAAGTTAAAAAAGGTGTGTGATGAAGACATTGATAGTGAAATATTAACTGATGACAATGTAGATTTAGAGACTATTAAAGTTAATACCAGAAAGAGAAGTAGAAGAGTTGTAGACGACGACTCGGATACAGAACCAGAGATAAATGCCAAGAAGTTTAAAACTGTCGATGTACAGGTCAAAGAGAAACCTAAAAAAAGGGTGAGAGTTATAAAAGAGAGGAAACCGAAAACTTCCAAATCAGCTGATGAGATCAAAAGAGTGGCGAGTGCCCAAgaatttgacgtcatatttttatcTAGAGAAGAGCAGTTGGAAGAGATAGAAGAGCGTCGGCAGGCAGCATTAAAGGTGAAGAATAGTATAAAGTGCAAGTATTGTGGCAAAAACTTCCAGACTCAAGATAGACTGGATGCACACTTTAAGTTTTACCACGATCCTAGTGTAGGACATTTGGTGTGCGAGTTCTGTCAGTGCCGTTTTAAAGCGAGGCATAAGTTTTCGCATCATTTAAGGATACACTTGGTCAGATTCAGCTGTCGAAACTGTTCGTTCACGACTAAGAGGGATTGCACTCTGAAGCGGCACTTCGAGTGGCACCAGGGCAAGCGGCACATGTGTCAGTACTGCGAGAAGGACTTCGCCAAGATCTCTAGCTACCTCTCGCACGTGAGGCTAATCCACGCGGGCGAGCTGCCCTGGTGTGAACTGTGTGGAGAGTCCTTTATAGGAGAAAAAGGCGTCCAAGCGCACAAAAAGCTACGCCACAGAGACATAAAcgtatcaaaatttgtttgcactAACTGCAAGACTAGTTTTCTGAACGAAGATGCTCTCCATAGACACAAGAATCAGAATAGATGCGACTTGGCGAATTGTGTTCAGTGTGGCGACGCGTTCGCCAGTCTACAGTTGCTGAAGTATCATTTGGTTCAGAGACACACGGCCGATGGGCTAGTGACGGACTGCAACGGTTGTGGAGTGAGgtTCCACAACACGTCGGCGTTCCATCGCCATATGACAGCGTGCGGCGCCAACGCGGTGTGCGTGCAGTGTGGGGAACACTTTGATGAAGAGAGACAGTTGAAGGAACACGAGGCTAAGGAGCATACGAGCACCGACCTCTTCAAATGTGAGGAGTGCAATAAGACATTTACAAACGCGTACTACTTCCGGGAGCATTGCAATTCGCACTTCAAGAACAAGGAAGCGGATCCAAGACGGAAGCCCCGCGGGCGCGGCTCCCGTCCTTTGGACCCGTCGCTGCGTCGCTGGCGCGTGGTGGGGGAGGAGGCCGCCGACGTCGTCATGGAGCGGGAGGCGCCCAAGCGGAGCGCTGCCAAGAAGGGCGCCATGTGCGAGGTGTGCGGGAAGAGCTTCCAGAACGCGGGTCTGCTGAAGTACCACCAGCGCATCCACTCGGGCGAGAGGCCGTTCCAGTGCACGCAGTGTACGAAATCCTTCACGACAAATAGATTATTAGAGGAACACGTTCGCGTCCACACCGGCGAGCGTCCGTACAAGTGTTCGCACTGCTCCAAGGCGTTCAAGACACTCGCCGCGCTCAACAGGCACGACCTGGTCCACAACGGCCTACGTCGCCACGTGTGCCAACTGTGCGACAAGACCTTCCAAACGTCGTCCTGTGCTAAGGTGCACATCAAAACTGTGCACATGAAACTGCCCACGCCGCCCAGGGTGCGCAGGCGCAGGGTCAAAGACGAATAG
- Protein Sequence
- MWSVNIKNNDNAVACRGCLATDVRLCDIHELNLSEAYVQLIGISLQDHFPHHLCVFCRTLLVKFLSFRDKCRRSQDILVDAELQGRCITPNTLREIGHWNFKPPYTQITITEANEYVESAVDAKLDIGFKQEVDLPNDVLYFKEDKDLSVDNDDFGDDRDDDDVVEPLEIFADDCIDVEIPKIKSKKKSKRLDDNLDTARRVTRKKLKKVCDEDIDSEILTDDNVDLETIKVNTRKRSRRVVDDDSDTEPEINAKKFKTVDVQVKEKPKKRVRVIKERKPKTSKSADEIKRVASAQEFDVIFLSREEQLEEIEERRQAALKVKNSIKCKYCGKNFQTQDRLDAHFKFYHDPSVGHLVCEFCQCRFKARHKFSHHLRIHLVRFSCRNCSFTTKRDCTLKRHFEWHQGKRHMCQYCEKDFAKISSYLSHVRLIHAGELPWCELCGESFIGEKGVQAHKKLRHRDINVSKFVCTNCKTSFLNEDALHRHKNQNRCDLANCVQCGDAFASLQLLKYHLVQRHTADGLVTDCNGCGVRFHNTSAFHRHMTACGANAVCVQCGEHFDEERQLKEHEAKEHTSTDLFKCEECNKTFTNAYYFREHCNSHFKNKEADPRRKPRGRGSRPLDPSLRRWRVVGEEAADVVMEREAPKRSAAKKGAMCEVCGKSFQNAGLLKYHQRIHSGERPFQCTQCTKSFTTNRLLEEHVRVHTGERPYKCSHCSKAFKTLAALNRHDLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPTPPRVRRRRVKDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012312;
- 90% Identity
- -
- 80% Identity
- -