Acon030477.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acrobasis consociella
Gene Symbol
-
Assembly
GCA_963555685.1
Location
OY743132.1:8725760-8755021[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0094 0.8 11.2 2.0 2 23 330 352 329 352 0.92
2 14 1.4 1.2e+02 4.4 8.1 2 23 360 381 359 381 0.97
3 14 5 4.3e+02 2.6 5.7 1 23 385 407 385 407 0.94
4 14 0.0022 0.18 13.2 1.3 1 23 412 435 412 435 0.95
5 14 0.14 12 7.5 0.1 3 23 442 463 442 463 0.95
6 14 0.026 2.3 9.8 0.2 1 21 471 491 471 492 0.95
7 14 1.1 96 4.7 0.1 3 23 500 521 499 521 0.90
8 14 0.0071 0.6 11.6 0.2 3 20 530 547 528 549 0.94
9 14 0.063 5.4 8.6 0.3 2 23 555 577 555 577 0.92
10 14 0.00072 0.061 14.7 4.5 1 19 622 640 622 644 0.91
11 14 6.4e-06 0.00054 21.2 0.2 2 23 698 719 698 719 0.97
12 14 2.3e-06 0.00019 22.6 1.3 1 23 725 747 725 747 0.99
13 14 7.7e-05 0.0065 17.8 1.4 1 19 753 771 753 775 0.93
14 14 0.00069 0.058 14.8 3.7 1 23 781 804 781 804 0.97

Sequence Information

Coding Sequence
ATGTGGTCGGTTAGTGTTAAAAATAACGATAATGCTGTAGCTTGTAGAGGTTGCCTTGCTACAGATGTGAGATTATCTGATATTCATGAGCATAATTTGTCTGAGGCCTATGTGCAACTTATTGGAATTTCGcTCCAAGATCACTTGCCGCACCACCTATGTGTGTTCTGCCGCGCGTTGCTGCTAAAGTTCCTGTCTTTCAGGGACAAATGCCGAAGGTCACAGGAGATACTCGTCGATGCTGAGTTTCAGGGCAGATGtttaACACCCAACACTTTACGAGAGATAGGACACTGGAATTGTAAACCGCGATACACACAGATAACTATCACAGAAGCAAATGAATATGTGGAATCGGCCATAGAGGAAAAAATAGACACAGGATTCAAACAAGAAGTAGATTTACCTAATGATGTCTTGTATTTTAAAGAGGATAAGGATGTAAGTTTAGATAATGATGATTTCGGTAACattaatgatgatgaggatAATGATGTGGTAGAGCCCTTAGAAATATTTGCTGATGACTGCATAGATATAGAAGTTCCTAAAGTACCTTCTAAAAAGAAAAGCAAAAGAATAGATGACAATTTAGACACAGCCCGTAAAACAACtagaaaaaagttaaaaaaagtttttgaagaAGATGATGAAAGTGAAATACTAAATGAAGACGATGTAGATTTAGAAACTATCAAAATTAATACTAGAAAAAGAAGTAAAAGAATTTTAAACGACGACTCAGATACAGAACCAGAGATAAATACAAGAAAGAAGTTTAAAACCGTAGAAGATGAAGGCAAAGCGAAACAAAAAAAGAGAGTGAGAGTCAAAAAAGAGAGGAAGCCGAAAACTTCCAAATCAGCTGATGAAATCAAAAAAGTTGCGGCTAGCCAAGAATTTGACGTCATATTCTTAACAAGAGAAGAGCAGTTAGAAGAAATAGAAGAACGGAGGCAGGCAGCGTTGAAAGTGAAGAATAGTATCAAGTGCAAGTTCTGTGGCAAAAACTTCCAGACTCAAGACAGATTGGACGCGCACTTCAAGTTCTACCACGATCCTAGTGTAGGGCATTTGGTGTGTGAGTTCTGTCAGTGCCGCTTTAAGGCGAGACATAAGTTCTCCCATCATCTGAGGATACACTTGGTCAGATTTAGCTGTCGAAACTGTTCGTTTACGACTAAACGGGATTGCACCCTAAAGAGGCACTTCGAGTGGCACCAAGGCAAGCGGCACATGTGTCAGTACTGTGATAAAGACTTCGCCAAGATCTCAAGCTACCTCTCACACGTCAGACTGATCCACGCGGGCGAGTTGCCCTGGTGCGAACTCTGCGGAGAGTCCTTCATAGGGGAAAAAGGCGTCCAGGCTCACAAAAAACTACGTCACAGAGACATTGACGTATCCAAATTTGTATGCGCGAACTGCAAAACCAGTTTTCTGAACGAAGACGGTCTACGCAGACACCAGAATCAGAACAGATGTGACTTGGCGAATTGTGTGCAGTGTGGCGACGCGTTTGCGAGTCTACAGTTGCTGAAGTATCACTTGGTGCAGAGACACACGGCAGATGGACTAGTGACGGATTGCGAGGGGTGTGGGGTGAGGTTCCACAACACCTCGGCGTTCCAGCGCCATCTATCTGCGTGCGGCGCCAGCGCGGTGTGTGTTCAATGCGGGGAACACTTTGACGAGGAGAGACAGCTAAAGGAACACGAGGCTAAGGAGCATACGAGCACGGATGTCTTCAAATGCGAGGAGGAGGGGGAGTGTATAGTCAACTTGTTAGGAGATAGTAAACACTTTGATGAGGAGAGACAGCTGAAGGAACACGAGGCTAAGGAGCATACGAGCATAGACCTCTTTAAATGCGAGGAGTGCAACAAGACGTTCACGAACGCGTACTACTTCCGGGAgcactgcaacgcacactacaAGAACAAGGAAGCGGATCCAAGGCGGAAGCCCCGCGGGCGCGGCAGCCGGTCGCTGGACCCGTCGCTGCGGCGCTGGCGCGTCGTGGGCGAGGACGCGCACGACGTCGTCATGGAGCGGGAGGCGCCGCGCGGGGCGCCGCCCAAGCGGGGCGCCGTCTGCGAGGTCTGCGGGAAGAGCTTCCAGAACGCGGGCCTCCTGAAGTACCACCAGCGTATCCACTCCGGCGAGCGACCGTTCCAATGCACGCAGTGCTCCAAATCATTCACCACAAACCGGTTGTTAGAGGAACACGTTCGCGTCCACACCGGCGAGCGTCCGTACAAGTGTTCGCACTGCTCCAAGGCGTTCAAGACGCTCGCCGCGCTCAACAGGCACGACCTGGTCCACAACGGTCTACGTCGCCACGTATGCCAACTGTGCGACAAGACCTTCCAAACGTCGTCCTGTGCTAAAGTGCACATCAAAACTGTGCACATGAAACTGCCCACGCCGCCCAGAGTGCGCAGACGCAGGGTCAAAGACGAATAG
Protein Sequence
MWSVSVKNNDNAVACRGCLATDVRLSDIHEHNLSEAYVQLIGISLQDHLPHHLCVFCRALLLKFLSFRDKCRRSQEILVDAEFQGRCLTPNTLREIGHWNCKPRYTQITITEANEYVESAIEEKIDTGFKQEVDLPNDVLYFKEDKDVSLDNDDFGNINDDEDNDVVEPLEIFADDCIDIEVPKVPSKKKSKRIDDNLDTARKTTRKKLKKVFEEDDESEILNEDDVDLETIKINTRKRSKRILNDDSDTEPEINTRKKFKTVEDEGKAKQKKRVRVKKERKPKTSKSADEIKKVAASQEFDVIFLTREEQLEEIEERRQAALKVKNSIKCKFCGKNFQTQDRLDAHFKFYHDPSVGHLVCEFCQCRFKARHKFSHHLRIHLVRFSCRNCSFTTKRDCTLKRHFEWHQGKRHMCQYCDKDFAKISSYLSHVRLIHAGELPWCELCGESFIGEKGVQAHKKLRHRDIDVSKFVCANCKTSFLNEDGLRRHQNQNRCDLANCVQCGDAFASLQLLKYHLVQRHTADGLVTDCEGCGVRFHNTSAFQRHLSACGASAVCVQCGEHFDEERQLKEHEAKEHTSTDVFKCEEEGECIVNLLGDSKHFDEERQLKEHEAKEHTSIDLFKCEECNKTFTNAYYFREHCNAHYKNKEADPRRKPRGRGSRSLDPSLRRWRVVGEDAHDVVMEREAPRGAPPKRGAVCEVCGKSFQNAGLLKYHQRIHSGERPFQCTQCSKSFTTNRLLEEHVRVHTGERPYKCSHCSKAFKTLAALNRHDLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPTPPRVRRRRVKDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00013406;
90% Identity
-
80% Identity
-